RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	AKR7L	Q8NHP1	331 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	C14orf79	Q96F83	325 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNF799	Q96GE5	643 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	ANXA10	Q9UJ72	324 aa		10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	FOXD3	Q9UJU5	478 aa	Predicted RBP	10.87	□□□□□ -0.67
RNF4-222	ENST00000541204	EP300	Q09472	2414 aa	Predicted RBP	10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	FAM166B	A8MTA8	275 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	SPRY1	O43609	319 aa	Predicted RBP	10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	GAPDH	P04406	335 aa	Known RBP	10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	GLI4	P10075	376 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	NR2C1	P13056	603 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	CD59	P13987	128 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	ITGA3	P26006	1051 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	MTCP1	P56278	107 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	CLDN15	P56746	228 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	HABP2	Q14520	560 aa	Predicted RBP	10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	TAF9	Q16594	264 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	C10orf128	Q5T292	105 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	C9orf135	Q5VTT2	229 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	CDCP2	Q5VXM1	449 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	DBX2	Q6ZNG2	339 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	AAED1	Q7RTV5	226 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204		Q96M66	194 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	SIGLEC12	Q96PQ1	595 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	SMCO4	Q9NRQ5	59 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	NCKAP5	O14513	1909 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	CDX4	O14627	284 aa	Predicted RBP	10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	NME2P1	O60361	137 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	SNRPE	P62304	92 aa	Known RBP	10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	TSPO2	Q5TGU0	170 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	BRICD5	Q6PL45	260 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	C20orf196	Q8IYI0	205 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	IFT22	Q9H7X7	185 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	RPS10P5	Q9NQ39	176 aa		10.86	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNF850	A8MQ14	1090 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	RRP8	O43159	456 aa	Known RBP	10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	EIF3G	O75821	320 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	DIRAS3	O95661	229 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	TSPAN15	O95858	294 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	MBP	P02686	304 aa	Predicted RBP	10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	ECI1	P42126	302 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	B2M	P61769	119 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	FAM3A	P98173	230 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	EIF3I	Q13347	325 aa	Known RBP	10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	ARL6IP1	Q15041	203 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	MIDN	Q504T8	468 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	DYRK2	Q92630	601 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	IL17B	Q9UHF5	180 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	AK3	Q9UIJ7	227 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	CFAP47	Q6ZTR5	3102 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	DOCK10	Q96BY6	2186 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	CACNA1H	O95180	2353 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	FAM230A	A0A1W2PPH8	454 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	XRCC2	O43543	280 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	OR5AC1	P0C628	307 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	ACKR3	P25106	362 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	FHIT	P49789	147 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	FXYD4	P59646	89 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNF616	Q08AN1	781 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	PPA1	Q15181	289 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	TGIF1	Q15583	401 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	RTL6	Q6ICC9	239 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	UBAC2	Q8NBM4	344 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	LYPD6B	Q8NI32	183 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	SGK3	Q96BR1	496 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	TIMM10B	Q9Y5J6	103 aa		10.85	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNF716	A6NP11	495 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	SGCE	O43556	437 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	CA11	O75493	328 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	ZNF133	P52736	654 aa	Predicted RBP	10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	RAB5B	P61020	215 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	HGFAC	Q04756	655 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	CEACAM16	Q2WEN9	425 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	LYZL2	Q7Z4W2	148 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	GPR137C	Q8N3F9	429 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	OR2V1	Q8NHB1	315 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	NTNG2	Q96CW9	530 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	RNF122	Q9H9V4	155 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	DECR2	Q9NUI1	292 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	ATPIF1	Q9UII2	106 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	POMT1	Q9Y6A1	747 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	FAM221A	A4D161	298 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	APOC1	P02654	83 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	IFNA4	P05014	189 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	SNRNP70	P08621	437 aa	Known RBP	10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	CBR1	P16152	277 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	OTX1	P32242	354 aa	Predicted RBP	10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	SNCA	P37840	140 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	RSU1	Q15404	277 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	TMEM164	Q5U3C3	297 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	ABHD17B	Q5VST6	288 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	C15orf54	Q8N8G6	183 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	FGFBP3	Q8TAT2	258 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	SPTSSA	Q969W0	71 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	HIST1H2BA	Q96A08	127 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	MARS2	Q96GW9	593 aa	Known RBP	10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	REEP6	Q96HR9	211 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	C20orf24	Q9BUV8	137 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	WFDC1	Q9HC57	220 aa		10.84	□□□□□ -0.67
RNF4-222	ENST00000541204	FAM212B	Q9NTI7	297 aa	Predicted RBP	10.84	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 191 ms