RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ALX3O95076 343 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 HAND1O96004 215 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 OR3A1P47881 315 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 POU3F4P49335 361 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 RBP2P50120 134 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 BMXP51813 675 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 MTCP1P56278 107 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 FOXL1Q12952 345 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 CDK5R1Q15078 307 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 PACRGLQ8N7B6 248 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 ZNF676Q8N7Q3 588 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 C3orf56Q8N813 242 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 OR13C3Q8NGS6 347 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 SSMEM1Q8WWF3 244 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 CYGBQ8WWM9 190 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 SGCDQ92629 289 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 FAM234AQ9H0X4 552 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 ZCCHC4Q9H5U6 513 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 HMG20AQ9NP66 347 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 MMP24Q9Y5R2 645 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 POMT1Q9Y6A1 747 aa8.66□□□□□ -1.02
CD44-227ENST00000528086 MAGEA13PA6NCF6 341 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 TMEM212A6NML5 194 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 ODF3BA8MYP8 253 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 XPNPEP2O43895 674 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 NDUFA7O95182 113 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 CHRM2P08172 466 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 JUNBP17275 347 aaPredicted RBP8.65□□□□□ -1.02
CD44-227ENST00000528086 PRKACBP22694 351 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 GDNFP39905 211 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 CAPZA1P52907 286 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 ATP1B3P54709 279 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 CNN3Q15417 329 aaKnown RBP8.65□□□□□ -1.02
CD44-227ENST00000528086 KLHL22Q53GT1 634 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 ZNF782Q6ZMW2 699 aaPredicted RBP8.65□□□□□ -1.02
CD44-227ENST00000528086 Q6ZSV7 163 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 LHFPL4Q7Z7J7 247 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 CMTM4Q8IZR5 234 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 OR8H2Q8N162 312 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 FAM58AQ8N1B3 248 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 OR5AK2Q8NH90 309 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 PPP1R35Q8TAP8 253 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 EMG1Q92979 244 aaKnown RBP8.65□□□□□ -1.02
CD44-227ENST00000528086 SPSB1Q96BD6 273 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 COQ2Q96H96 371 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 SNX22Q96L94 193 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 PGLYRP3Q96LB9 341 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 CHST6Q9GZX3 395 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 FKBP14Q9NWM8 211 aa8.65□□□□□ -1.02
CD44-227ENST00000528086 DIMT1Q9UNQ2 313 aaKnown RBP8.65□□□□□ -1.02
CD44-227ENST00000528086 CAB39Q9Y376 341 aaPredicted RBP8.65□□□□□ -1.02
CD44-227ENST00000528086 TRBV5-5A0A0J9YX44 114 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 MEIOCA2RUB1 952 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 SNTNA6NMZ2 147 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 H0YAE9 185 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 SLC1A7O00341 560 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 OR2H2O95918 312 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 SERPINA3P01011 423 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 ZNF20P17024 532 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 PRKACAP17612 351 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 LMO1P25800 156 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 DCKP27707 260 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 C21orf33P30042 268 aaPredicted RBP8.64□□□□□ -1.03
CD44-227ENST00000528086 CAPGP40121 348 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 SOX2P48431 317 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 SNU13P55769 128 aaKnown RBP8.64□□□□□ -1.03
CD44-227ENST00000528086 KISS1Q15726 138 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 FBLN7Q53RD9 439 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 DMKNQ6E0U4 476 aaPredicted RBP8.64□□□□□ -1.03
CD44-227ENST00000528086 ASCL4Q6XD76 172 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 LHFPL2Q6ZUX7 228 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 DHRSXQ8N5I4 330 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 ZFP41Q8N8Y5 198 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 ASCC1Q8N9N2 400 aaKnown RBP8.64□□□□□ -1.03
CD44-227ENST00000528086 BEND2Q8NDZ0 799 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 ZNF555Q8NEP9 628 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 Q8NFD4 153 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 LINC01006Q8NI28 216 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 WFDC12Q8WWY7 111 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 TFAP2CQ92754 450 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 STMN2Q93045 179 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 COMMD4Q9H0A8 199 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 MEGF9Q9H1U4 602 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 TAS2R4Q9NYW5 299 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 PSORS1C1Q9UIG5 152 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 MEGF8Q7Z7M0 2845 aa8.64□□□□□ -1.03
CD44-227ENST00000528086 A0A0G2JK05 382 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 SIRPB1O00241 398 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 GABRPO00591 440 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 PIN1P1O15428 100 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 SULT1B1O43704 296 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 CHST1O43916 411 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 FBP1P09467 338 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 ZNF728P0DKX0 622 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 CGB3P0DN86 165 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 CGB7P0DN87 165 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 COX7A1P24310 79 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 GBX2P52951 348 aaPredicted RBP8.63□□□□□ -1.03
CD44-227ENST00000528086 RAG2P55895 527 aa8.63□□□□□ -1.03
CD44-227ENST00000528086 PROK1P58294 105 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms