RNA–Protein interactions for RNA: ENST00000511843.5

RNF4-215, Transcript of ring finger protein 4, human

TSL 5

Gene RNF4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-215	ENST00000511843	CCDC159	P0C7I6	412 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	GABRR1	P24046	479 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	BMX	P51813	675 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	UBE2E1	P51965	193 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	RAG2	P55895	527 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	IL18R1	Q13478	541 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	TAF9	Q16594	264 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	OGFRL1	Q5TC84	451 aa	Predicted RBP	10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	TTC23	Q5W5X9	447 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	NCR3LG1	Q68D85	454 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	ASPHD2	Q6ICH7	369 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	LAIR2	Q6ISS4	152 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	GDPD3	Q7L5L3	318 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	TCF23	Q7RTU1	214 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	PACRGL	Q8N7B6	248 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	OR4S1	Q8NGB4	309 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	OR5D13	Q8NGL4	314 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	OR13C5	Q8NGS8	318 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	TBC1D15	Q8TC07	691 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	SPSB1	Q96BD6	273 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	ORAI1	Q96D31	301 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	AJUBA	Q96IF1	538 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	C1RL	Q9NZP8	487 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	NKX1-2	Q9UD57	310 aa	Predicted RBP	10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	DHDH	Q9UQ10	334 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	GSTK1	Q9Y2Q3	226 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	POMT1	Q9Y6A1	747 aa		10.84	□□□□□ -0.67
RNF4-215	ENST00000511843	SULT1B1	O43704	296 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	XPNPEP2	O43895	674 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	CYB5A	P00167	134 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	PAH	P00439	452 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	MT-ND2	P03891	347 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	CRYBA1	P05813	215 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	CAPG	P40121	348 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	DLX6	P56179	175 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	SRSF4	Q08170	494 aa	Known RBP	10.83	□□□□□ -0.68
RNF4-215	ENST00000511843		Q8IYB0	196 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	OR8H2	Q8N162	312 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	PARP16	Q8N5Y8	322 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	TMEM86B	Q8N661	226 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	ZFP41	Q8N8Y5	198 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	OR51A2	Q8NGJ7	313 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	ZNF747	Q9BV97	191 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	JAM3	Q9BX67	310 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	FAM234A	Q9H0X4	552 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	HMG20A	Q9NP66	347 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	TAS2R4	Q9NYW5	299 aa		10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	CAB39	Q9Y376	341 aa	Predicted RBP	10.83	□□□□□ -0.68
RNF4-215	ENST00000511843	NBEAL1	Q6ZS30	2694 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	CASQ2	O14958	399 aa	Predicted RBP	10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	RPSA	P08865	295 aa	Known RBP	10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	TMEM225B	P0DP42	221 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	DCK	P27707	260 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	ZP1	P60852	638 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	SCN1B	Q07699	218 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	MRPL28	Q13084	256 aa	Known RBP	10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	DOC2B	Q14184	412 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	ZNF146	Q15072	292 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	CDK5R1	Q15078	307 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	KISS1	Q15726	138 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	GRK1	Q15835	563 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	SERPINA12	Q8IW75	414 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	SETD9	Q8NE22	299 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	RPS4Y2	Q8TD47	263 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	GGH	Q92820	318 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	SNX22	Q96L94	193 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	MYCBP	Q99417	103 aa	Predicted RBP	10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	ING3	Q9NXR8	418 aa		10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	DIMT1	Q9UNQ2	313 aa	Known RBP	10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	SF3B6	Q9Y3B4	125 aa	Known RBP	10.82	□□□□□ -0.68
RNF4-215	ENST00000511843	PNMA8C	A0A1B0GUJ8	204 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843		A0A1W2PPH5	198 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	C17orf98	A8MV24	154 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843		H3BUX3	64 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	KDM4B	O94953	1096 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	MYL12A	P19105	171 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	OR3A1	P47881	315 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	ACSM1	Q08AH1	577 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	ST3GAL4	Q11206	333 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	SPIN3	Q5JUX0	258 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	RPL22L1	Q6P5R6	122 aa	Known RBP	10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	TMPRSS11A	Q6ZMR5	421 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	LHFPL4	Q7Z7J7	247 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	SATL1	Q86VE3	508 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	C8orf59	Q8N0T1	100 aa	Predicted RBP	10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	OR5D14	Q8NGL3	314 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	DYRK2	Q92630	601 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	TMEM80	Q96HE8	168 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	PPA2	Q9H2U2	334 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	DPAGT1	Q9H3H5	408 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	EXOSC4	Q9NPD3	245 aa	Known RBP	10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	C8orf4	Q9NR00	106 aa		10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	EXOSC1	Q9Y3B2	195 aa	Known RBP	10.81	□□□□□ -0.68
RNF4-215	ENST00000511843	IRGM	A1A4Y4	181 aa		10.8	□□□□□ -0.68
RNF4-215	ENST00000511843	GABRP	O00591	440 aa		10.8	□□□□□ -0.68
RNF4-215	ENST00000511843	OR2H2	O95918	312 aa		10.8	□□□□□ -0.68
RNF4-215	ENST00000511843	ZNF728	P0DKX0	622 aa		10.8	□□□□□ -0.68
RNF4-215	ENST00000511843	RAB3A	P20336	220 aa		10.8	□□□□□ -0.68
RNF4-215	ENST00000511843	LY6E	Q16553	131 aa		10.8	□□□□□ -0.68
RNF4-215	ENST00000511843	MIDN	Q504T8	468 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 50 ms