RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 SMARCD3Q6STE5 483 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 FIP1L1Q6UN15 594 aaKnown RBP6.84□□□□□ -1.31
SCN1A-207ENST00000507401 LRRN1Q6UXK5 716 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 FOXL2NBQ6ZUU3 175 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-207ENST00000507401 GLCCI1Q86VQ1 547 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 LRP11Q86VZ4 500 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 LRRC18Q8N456 261 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 ARL6IP6Q8N6S5 226 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 DNAAF1Q8NEP3 725 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 OR10K1Q8NGX5 313 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 RNASE11Q8TAA1 199 aaKnown RBP6.84□□□□□ -1.31
SCN1A-207ENST00000507401 THAP6Q8TBB0 222 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 THEM6Q8WUY1 208 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 FCAMRQ8WWV6 532 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 GATAD2BQ8WXI9 593 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 RDH5Q92781 318 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 ARL11Q969Q4 196 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 NABP1Q96AH0 204 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 POM121L2Q96KW2 1035 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 CXorf58Q96LI9 332 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 SYT3Q9BQG1 590 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 BPESC1Q9GZL8 116 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 TUBA4BQ9H853 241 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 CHODLQ9H9P2 273 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 SEBOXQ9HB31 216 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-207ENST00000507401 TUBG2Q9NRH3 451 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 SMCO4Q9NRQ5 59 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 NKIRAS2Q9NYR9 191 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 TREM2Q9NZC2 230 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 RHCGQ9UBD6 479 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 GRHPRQ9UBQ7 328 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 ZNF107Q9UII5 783 aaPredicted RBP6.84□□□□□ -1.31
SCN1A-207ENST00000507401 KCNS2Q9ULS6 477 aa6.84□□□□□ -1.31
SCN1A-207ENST00000507401 MALRD1Q5VYJ5 2156 aa6.84□□□□□ -1.32
SCN1A-207ENST00000507401 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.83□□□□□ -1.32
SCN1A-207ENST00000507401 TRBV4-1A0A0J9YWV2 114 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 SLC22A31A6NKX4 558 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 DBX1A6NMT0 343 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 C17orf100A8MU93 164 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 J3KTA2 159 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 PIP5K1CO60331 668 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 KDM4BO94953 1096 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 TGFAP01135 160 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 IGHV3-13P01766 116 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 HPXP02790 462 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 EIF4EP06730 217 aaKnown RBP6.83□□□□□ -1.32
SCN1A-207ENST00000507401 CD14P08571 375 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 CSF1P09603 554 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 CALCBP10092 127 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 COX5BP10606 129 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 CCL2P13500 99 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 ZNF32P17041 273 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 COL8A2P25067 703 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 FPR3P25089 353 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 LAP3P28838 519 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 CDAP32320 146 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 ATP6V1E1P36543 226 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 GDNFP39905 211 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 RAB5CP51148 216 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 KLF3P57682 345 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-207ENST00000507401 ERVK-25P63136 954 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 PSG4Q00888 419 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 RELQ04864 619 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-207ENST00000507401 FMODQ06828 376 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 SLC3A1Q07837 685 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 SMCO1Q147U7 214 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 ZNF718Q3SXZ3 478 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 AWAT2Q6E213 333 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 EIF5AL1Q6IS14 154 aaKnown RBP6.83□□□□□ -1.32
SCN1A-207ENST00000507401 ARL9Q6T311 187 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 PAQR4Q8N4S7 273 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-207ENST00000507401 KCNRGQ8N5I3 272 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 LINC01356Q8N9X3 169 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 ST8SIA2Q92186 375 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 TSPAN32Q96QS1 320 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 ABHD1Q96SE0 405 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 GPX7Q96SL4 187 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-207ENST00000507401 TMED9Q9BVK6 235 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 MFFQ9GZY8 342 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 TMPRSS5Q9H3S3 457 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 NRIP3Q9NQ35 241 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 HINT3Q9NQE9 182 aaKnown RBP6.83□□□□□ -1.32
SCN1A-207ENST00000507401 TAAR3PQ9P1P4 343 aa6.83□□□□□ -1.32
SCN1A-207ENST00000507401 LOC100509620A0A075B734 347 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 TRAV27A0A087WT01 109 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 IGKV1D-43A0A0B4J1Z2 117 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 TRAV20A0A0B4J274 112 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 ANKRD20A5PA0PJZ0 165 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 LRP5LA4QPB2 252 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 RNF222A6NCQ9 220 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 C5orf52A6NGY3 159 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 B4DSR2 109 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 LYNX1G3V0Z9 82 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 J3QRE1 110 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 XKRYO14609 159 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 CDC42EP2O14613 210 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 BCL2L11O43521 198 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 NDUFB2O95178 105 aa6.82□□□□□ -1.32
SCN1A-207ENST00000507401 IGHV2-70P01814 119 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms