RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CLINT1Q14677 625 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 CEACAM16Q2WEN9 425 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 DCAF12Q5T6F0 453 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 AAED1Q7RTV5 226 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 FAM24BQ8N5W8 94 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 FNDC9Q8TBE3 224 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 SPTSSAQ969W0 71 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 A0A0U1RQV5 110 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 CELA3AP09093 270 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 NAT2P11245 290 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 FPR2P25090 351 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 MPZP25189 248 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 OTX1P32242 354 aaPredicted RBP14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 HTR5AP47898 357 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 CAV2P51636 162 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 HABP2Q14520 560 aaPredicted RBP14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 SMCO1Q147U7 214 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 HAS2Q92819 552 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 RAB18Q9NP72 206 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 TMEM100Q9NV29 134 aa14.35□□□□□ -0.11
CCDC88B-210ENST00000494566 A0A1W2PPE2 198 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 NR2C1P13056 603 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 RPS2P15880 293 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 PIGPP57054 158 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 HIST1H3AP68431 136 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 HIST2H3PS2Q5TEC6 136 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 FAM27BQ5VT28 67 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 HIST2H3AQ71DI3 136 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 ASB13Q8WXK3 278 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 OCSTAMPQ9BR26 566 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 SEC11CQ9BY50 192 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 P4HTMQ9NXG6 502 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 C19orf67A6NJJ6 358 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 ZNF716A6NP11 495 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 GPR37O15354 613 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 TSPAN15O95858 294 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 IFNA2P01563 188 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 NQO2P16083 231 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 SRD5A2P31213 254 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 HOXA1P49639 335 aaPredicted RBP14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 PIGYQ3MUY2 71 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 AWAT1Q58HT5 328 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 FOXL2NBQ6ZUU3 175 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 FAM89BQ8N5H3 189 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 MARS2Q96GW9 593 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 ABHD14AQ9BUJ0 271 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 ARRDC1-AS1Q9H2J1 176 aa14.34□□□□□ -0.11
CCDC88B-210ENST00000494566 TRAV20A0A0B4J274 112 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 COLCA2A8K830 154 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 SYNGR3O43761 229 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 CYC1P08574 325 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 OR5AC1P0C628 307 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 HNF4GQ14541 408 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 VAX1Q5SQQ9 334 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 MYPOPQ86VE0 399 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 GPR137CQ8N3F9 429 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 MAGT1Q9H0U3 335 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 OSGIN2Q9Y236 505 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 FOXI3A8MTJ6 420 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 CCL2P13500 99 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 CRYGSP22914 178 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 MRPS34P82930 218 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 ZXDAP98168 799 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 PSG4Q00888 419 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 TLE1Q04724 770 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 OR52M1Q8NGK5 317 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 NIT2Q9NQR4 276 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 TMEM38BQ9NVV0 291 aa14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 PUS1Q9Y606 427 aaKnown RBP eCLIP14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 MAP1BP46821 2468 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-210ENST00000494566 DCHS1Q96JQ0 3298 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 ZNF44P15621 663 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 ZNF14P17017 642 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 TBPP20226 339 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 NCMAPQ5T1S8 102 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 ARRDC1Q8N5I2 433 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 OR1F12Q8NHA8 337 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 PP6455Q8WZ26 134 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 SGCZQ96LD1 299 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 NUDT16L1Q9BRJ7 211 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 WFDC1Q9HC57 220 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 ANAPC10Q9UM13 185 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 CARHSP1Q9Y2V2 147 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 CACNA1DQ01668 2161 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 CDRT15L2A8MXV6 281 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 CCNOP22674 350 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 ZNF133P52736 654 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 PNLIPRP3Q17RR3 467 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 PEAR1Q5VY43 1037 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 FAHD2BQ6P2I3 314 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 C6orf15Q6UXA7 325 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 TMEM182Q6ZP80 229 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 PEG10Q86TG7 708 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 FAHD2AQ96GK7 314 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 THOC3Q96J01 351 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 FOXB1Q99853 325 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 PARPBPQ9NWS1 579 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 URGCP-MRPS24S4R325 110 aa14.32□□□□□ -0.12
CCDC88B-210ENST00000494566 A0A096LPE4 126 aa14.31□□□□□ -0.12
CCDC88B-210ENST00000494566 A0A1W2PPZ6 126 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms