RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 OR51T1Q8NGJ9 327 aa10.24□□□□□ -0.77
SDC1-206ENST00000482879 OR5H6Q8NGV6 325 aa10.24□□□□□ -0.77
SDC1-206ENST00000482879 LGALS14Q8TCE9 139 aa10.24□□□□□ -0.77
SDC1-206ENST00000482879 ACOT12Q8WYK0 555 aa10.24□□□□□ -0.77
SDC1-206ENST00000482879 AP3S1Q92572 193 aa10.24□□□□□ -0.77
SDC1-206ENST00000482879 TMEM246Q9BRR3 403 aa10.24□□□□□ -0.77
SDC1-206ENST00000482879 TMEM59Q9BXS4 323 aa10.24□□□□□ -0.77
SDC1-206ENST00000482879 FBLN5Q9UBX5 448 aa10.24□□□□□ -0.77
SDC1-206ENST00000482879 GLS2Q9UI32 602 aa10.24□□□□□ -0.77
SDC1-206ENST00000482879 MALRD1Q5VYJ5 2156 aa10.24□□□□□ -0.77
SDC1-206ENST00000482879 YLPM1P49750 1951 aaKnown RBP10.23□□□□□ -0.77
SDC1-206ENST00000482879 MYO9AB2RTY4 2548 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 IGKV1D-17A0A075B6S4 117 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 VWC2LB2RUY7 222 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 SH2D1BO14796 132 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 DEGS1O15121 323 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 NDUFA2O43678 99 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 HAND1O96004 215 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 TFF1P04155 84 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 RAB6AP20340 208 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 NR4A2P43354 598 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 CEBPDP49716 269 aaPredicted RBP10.23□□□□□ -0.77
SDC1-206ENST00000482879 RBM11P57052 281 aaKnown RBP10.23□□□□□ -0.77
SDC1-206ENST00000482879 SCAND1P57086 179 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 RPS27AP62979 156 aaKnown RBP10.23□□□□□ -0.77
SDC1-206ENST00000482879 SCN1BQ07699 218 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 PLA2G7Q13093 441 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 IL13RA2Q14627 380 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 ZNF146Q15072 292 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 PDCD1Q15116 288 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 TAF9Q16594 264 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 TMEM155Q4W5P6 130 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 KIAA2026Q5HYC2 2103 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 NHLRC3Q5JS37 347 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 SPIN3Q5JUX0 258 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 STUMQ69YW2 141 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 MZT2AQ6P582 158 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 METAP1DQ6UB28 335 aaPredicted RBP10.23□□□□□ -0.77
SDC1-206ENST00000482879 CD177Q8N6Q3 437 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 ANGPTL6Q8NI99 470 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 Q96M66 194 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 CCL13Q99616 98 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 GAL3ST1Q99999 423 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 URM1Q9BTM9 101 aaKnown RBP10.23□□□□□ -0.77
SDC1-206ENST00000482879 NARFLQ9H6Q4 476 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 COMMD3Q9UBI1 195 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 ITGB1BP2Q9UKP3 347 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 SPATA2Q9UM82 520 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 PCDHB10Q9UN67 800 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 ETV7Q9Y603 341 aa10.23□□□□□ -0.77
SDC1-206ENST00000482879 ARHGAP32A7KAX9 2087 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 NKX6-3A6NJ46 265 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 TNFRSF13BO14836 293 aaPredicted RBP10.22□□□□□ -0.77
SDC1-206ENST00000482879 GEMIN2O14893 280 aaKnown RBP10.22□□□□□ -0.77
SDC1-206ENST00000482879 ADAM20O43506 726 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 CHRM2P08172 466 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 ZNF44P15621 663 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 SLC25A16P16260 332 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 AMY2BP19961 511 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 GABRR1P24046 479 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 EFNB2P52799 333 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 DYNC1I2Q13409 638 aaKnown RBP10.22□□□□□ -0.77
SDC1-206ENST00000482879 IKZF1Q13422 519 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 ATPAF1Q5TC12 328 aaPredicted RBP10.22□□□□□ -0.77
SDC1-206ENST00000482879 Q6P435 159 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 LYPD2Q6UXB3 125 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 DCDC5Q6ZRR9 648 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 KRTAP1-3Q8IUG1 177 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 SPICQ8N5J4 248 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 PTX4Q96A99 478 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 TM2D1Q9BX74 207 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 LPAR5Q9H1C0 372 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 ZNF665Q9H7R5 613 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 SEBOXQ9HB31 216 aaPredicted RBP10.22□□□□□ -0.77
SDC1-206ENST00000482879 ZNF222Q9UK12 451 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 WNK2Q9Y3S1 2297 aa10.22□□□□□ -0.77
SDC1-206ENST00000482879 MAP1AP78559 2803 aaPredicted RBP10.21□□□□□ -0.77
SDC1-206ENST00000482879 METTL21EPA6NDL7 271 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 CEACAM18A8MTB9 384 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 SIRPB1O00241 398 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 TMPRSS2O15393 492 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 OR7C1O76099 320 aaPredicted RBP10.21□□□□□ -0.77
SDC1-206ENST00000482879 OR2H2O95918 312 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 CPT2P23786 658 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 PITPNBP48739 271 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 VEGFCP49767 419 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 COL10A1Q03692 680 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 FAM189A2Q15884 450 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 MPV17LQ2QL34 196 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 CNPY1Q3B7I2 92 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 ZNF788Q6ZQV5 615 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 SLC36A1Q7Z2H8 476 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 LINC00596Q86U02 117 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 SAMD12Q8N8I0 201 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 MCFD2Q8NI22 146 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 SDSLQ96GA7 329 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 POM121Q96HA1 1249 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 MED30Q96HR3 178 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 Q96MF0 132 aa10.21□□□□□ -0.77
SDC1-206ENST00000482879 GAFA1Q96PS6 74 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms