RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 PDCD1Q15116 288 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 TBC1D28Q2M2D7 210 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 CLDN23Q96B33 292 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 SCGB2A1O75556 95 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 GRPP07492 148 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 SLC25A6P12236 298 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 NTF3P20783 257 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 ARR3P36575 388 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 CEACAM16Q2WEN9 425 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 SLC35D1Q9NTN3 355 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 LTBP1Q14766 1721 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 TCAPO15273 167 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 TIMM8AO60220 97 aaPredicted RBP17.05■□□□□ 0.32
USP48-201ENST00000308271 RPL29P47914 159 aaKnown RBP17.05■□□□□ 0.32
USP48-201ENST00000308271 ARG2P78540 354 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 SLC38A11Q08AI6 406 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 FDX2Q6P4F2 183 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 FAM234AQ9H0X4 552 aa17.05■□□□□ 0.32
USP48-201ENST00000308271 LIPT2A6NK58 231 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 PNPP00491 289 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 RRADP55042 308 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 ALKBH3Q96Q83 286 aaPredicted RBP17.04■□□□□ 0.32
USP48-201ENST00000308271 TAAR9Q96RI9 348 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 CBR3O75828 277 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 LPAR6P43657 344 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 MLF1P58340 268 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 MEGF10Q96KG7 1140 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 FAM103A1Q9BTL3 118 aaKnown RBP17.04■□□□□ 0.32
USP48-201ENST00000308271 STARD10Q9Y365 291 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 DXOO77932 396 aaKnown RBP17.04■□□□□ 0.32
USP48-201ENST00000308271 ISG15P05161 165 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 SRSF5Q13243 272 aaKnown RBP17.04■□□□□ 0.32
USP48-201ENST00000308271 CLN3Q13286 438 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 KHDC3LQ587J8 217 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 OR2T10Q8NGZ9 312 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 LPAR5Q9H1C0 372 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 MTCH1Q9NZJ7 389 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 EDN3P14138 238 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 ATP6V0CP27449 155 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 GAS1P54826 345 aa17.04■□□□□ 0.32
USP48-201ENST00000308271 DSCR4P56555 118 aaPredicted RBP17.04■□□□□ 0.32
USP48-201ENST00000308271 TNFSF11O14788 317 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 DEDDO75618 318 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 KRTDAPP60985 99 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 DGAT2L6Q6ZPD8 337 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 PLXNA1Q9UIW2 1896 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 DUXBA0A1W2PPF3 345 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 UBE2G2P60604 165 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 SSX7Q7RTT5 188 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 HIST1H2BAQ96A08 127 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 CACFD1Q9UGQ2 172 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 ERRFI1Q9UJM3 462 aaPredicted RBP17.03■□□□□ 0.32
USP48-201ENST00000308271 LCTP09848 1927 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 AQP7P3A6NL99 342 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 EFNB1P98172 346 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 FOXQ1Q9C009 403 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 CACNG5Q9UF02 275 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 PRSS50Q9UI38 385 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 VAX2Q9UIW0 290 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 PILRAQ9UKJ1 303 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 MTCH2Q9Y6C9 303 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 RPS11P62280 158 aaKnown RBP eCLIP17.03■□□□□ 0.32
USP48-201ENST00000308271 FHL5Q5TD97 284 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 OR5AS1Q8N127 324 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 CNEP1R1Q8N9A8 125 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 GABRG3Q99928 467 aa17.03■□□□□ 0.32
USP48-201ENST00000308271 LAMTOR5O43504 91 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 P2RY4P51582 365 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 TAS2R45P59539 299 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 C2orf68Q2NKX9 166 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 OR10G3Q8NGC4 313 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 OR13G1Q8NGZ3 307 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 PTPMT1Q8WUK0 201 aaPredicted RBP17.02■□□□□ 0.32
USP48-201ENST00000308271 APOBEC3DQ96AK3 386 aaPredicted RBP17.02■□□□□ 0.32
USP48-201ENST00000308271 METTL1Q9UBP6 276 aaKnown RBP17.02■□□□□ 0.32
USP48-201ENST00000308271 CHST1O43916 411 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 PPYP01298 95 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 HNF1AP20823 631 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 B2MP61769 119 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 TMEM183BQ1AE95 376 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 MOB1BQ7L9L4 216 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 TMPRSS7Q7RTY8 843 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 TBC1D26Q86UD7 250 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 OR1L3Q8NH93 324 aa17.02■□□□□ 0.32
USP48-201ENST00000308271 TNFSF4P23510 183 aa17.02■□□□□ 0.31
USP48-201ENST00000308271 FCARP24071 287 aa17.02■□□□□ 0.31
USP48-201ENST00000308271 ZNF92Q03936 586 aa17.02■□□□□ 0.31
USP48-201ENST00000308271 DHRS11Q6UWP2 260 aa17.02■□□□□ 0.31
USP48-201ENST00000308271 PDCD11Q14690 1871 aaKnown RBP17.02■□□□□ 0.31
USP48-201ENST00000308271 H3BMH7 237 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 APOA2P02652 100 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 FAM157BP0CG42 384 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 HKR1P10072 659 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 FFAR4Q5NUL3 377 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 ROBO4Q8WZ75 1007 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 NEIL1Q96FI4 390 aaPredicted RBP17.01■□□□□ 0.31
USP48-201ENST00000308271 CD46P15529 392 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 FGF8P55075 233 aaPredicted RBP17.01■□□□□ 0.31
USP48-201ENST00000308271 EDDM3AQ14507 147 aa17.01■□□□□ 0.31
USP48-201ENST00000308271 DCAF12Q5T6F0 453 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms