RNA–Protein interactions for RNA: ENST00000299543.8

CTDP1-202, Transcript of CTD phosphatase subunit 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CTDP1, Length 3,380 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1-202ENST00000299543 A6NNC1 897 aa11.75□□□□□ -0.53
CTDP1-202ENST00000299543 MFNGO00587 321 aa11.75□□□□□ -0.53
CTDP1-202ENST00000299543 IGHV3-9P01782 118 aa11.75□□□□□ -0.53
CTDP1-202ENST00000299543 FHITP49789 147 aa11.75□□□□□ -0.53
CTDP1-202ENST00000299543 SNAI3Q3KNW1 292 aa11.75□□□□□ -0.53
CTDP1-202ENST00000299543 DNASE2BQ8WZ79 361 aa11.75□□□□□ -0.53
CTDP1-202ENST00000299543 RIMS4Q9H426 269 aaPredicted RBP11.75□□□□□ -0.53
CTDP1-202ENST00000299543 HDGFL3Q9Y3E1 203 aa11.75□□□□□ -0.53
CTDP1-202ENST00000299543 DHRS7CA6NNS2 312 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 DHHO43323 396 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 TRAPPC6AO75865 159 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 MMP7P09237 267 aaPredicted RBP11.74□□□□□ -0.53
CTDP1-202ENST00000299543 CCL4P13236 92 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 HLA-GP17693 338 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 HOXA5P20719 270 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 SULF2Q8IWU5 870 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 MCTS1Q9ULC4 181 aaKnown RBP11.74□□□□□ -0.53
CTDP1-202ENST00000299543 COL4A2P08572 1712 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 FPR2P25090 351 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 ZNF239Q16600 458 aaKnown RBP11.74□□□□□ -0.53
CTDP1-202ENST00000299543 TSPO2Q5TGU0 170 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 AADACL3Q5VUY0 350 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 LYSMD4Q5XG99 296 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 TCEAL6Q6IPX3 200 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 NMES1Q9C002 83 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 TAF9BQ9HBM6 251 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 TMEM100Q9NV29 134 aa11.74□□□□□ -0.53
CTDP1-202ENST00000299543 CHCHD2Q9Y6H1 151 aaPredicted RBP11.74□□□□□ -0.53
CTDP1-202ENST00000299543 SCAF4O95104 1147 aaKnown RBP11.73□□□□□ -0.53
CTDP1-202ENST00000299543 IFNA10P01566 189 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 TIPARPQ7Z3E1 657 aaKnown RBP11.73□□□□□ -0.53
CTDP1-202ENST00000299543 C2orf50Q96LR7 162 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 ALKBH3Q96Q83 286 aaPredicted RBP11.73□□□□□ -0.53
CTDP1-202ENST00000299543 NELFAQ9H3P2 528 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 SEMA5BQ9P283 1151 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 NXT1Q9UKK6 140 aaKnown RBP11.73□□□□□ -0.53
CTDP1-202ENST00000299543 FAM157AC9JC47 383 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 DHRS3O75911 302 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 CNOT4O95628 575 aaKnown RBP11.73□□□□□ -0.53
CTDP1-202ENST00000299543 TAS2R46P59540 309 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 SRSF4Q08170 494 aaKnown RBP11.73□□□□□ -0.53
CTDP1-202ENST00000299543 PHLDA2Q53GA4 152 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 VAX1Q5SQQ9 334 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 KDF1Q8NAX2 398 aaPredicted RBP11.73□□□□□ -0.53
CTDP1-202ENST00000299543 C1QL1O75973 258 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 CCNOP22674 350 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 CDX1P47902 265 aaPredicted RBP11.73□□□□□ -0.53
CTDP1-202ENST00000299543 HLA-BQ31612 363 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 OR2T2Q6IF00 324 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 ZNF774Q6NX45 483 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 C17orf78Q8N4C9 275 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 HPSE2Q8WWQ2 592 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 SHDQ96IW2 340 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 RAB18Q9NP72 206 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 B3GALT1Q9Y5Z6 326 aa11.73□□□□□ -0.53
CTDP1-202ENST00000299543 B4GALT1P15291 398 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 SPINK2P20155 84 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 EPHA8P29322 1005 aaPredicted RBP11.72□□□□□ -0.53
CTDP1-202ENST00000299543 PNLIPRP3Q17RR3 467 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 C9orf135Q5VTT2 229 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 ETFRF1Q6IPR1 90 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 PRSS54Q6PEW0 395 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 Q7L0L9 218 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 PCED1AQ9H1Q7 454 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 A0A0J9YW62 118 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 SMCO3A2RU48 225 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 CYB5BO43169 146 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 DIRAS3O95661 229 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 ENDOGQ14249 297 aaKnown RBP11.72□□□□□ -0.53
CTDP1-202ENST00000299543 SGPP2Q8IWX5 399 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 FNDC9Q8TBE3 224 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 SLC26A1Q9H2B4 701 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 TUBA4BQ9H853 241 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 DNAJC13O75165 2243 aa11.72□□□□□ -0.53
CTDP1-202ENST00000299543 SLC33A1O00400 549 aaPredicted RBP11.71□□□□□ -0.53
CTDP1-202ENST00000299543 NPSP0C0P6 89 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 PTGER4P35408 488 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 NUTF2P61970 127 aaKnown RBP11.71□□□□□ -0.53
CTDP1-202ENST00000299543 ABCA11PQ4W5N1 156 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 MIDNQ504T8 468 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 SLC25A53Q5H9E4 307 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 ZNF468Q5VIY5 522 aaPredicted RBP11.71□□□□□ -0.53
CTDP1-202ENST00000299543 IL34Q6ZMJ4 242 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 OR9K2Q8NGE7 335 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 OR14L1PQ8NHC6 308 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 SPTSSAQ969W0 71 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 DUSP23Q9BVJ7 150 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 SIRT7Q9NRC8 400 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 KCNIP3Q9Y2W7 256 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 TIMM10BQ9Y5J6 103 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 KPTNQ9Y664 436 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 CHD3Q12873 2000 aaKnown RBP11.71□□□□□ -0.53
CTDP1-202ENST00000299543 K7EPK0 472 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 IFNL4K9M1U5 179 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 XRCC2O43543 280 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 IFNA21P01568 189 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 FCGR3AP08637 254 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 OR5H8P0DN80 308 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 MPZP25189 248 aa11.71□□□□□ -0.53
CTDP1-202ENST00000299543 FAM189A2Q15884 450 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms