RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 SLC25A26Q70HW3 274 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 OR10Z1Q8NGY1 313 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 SULT4A1Q9BR01 284 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 GP6Q9HCN6 339 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 ZC4H2Q9NQZ6 224 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 ST3GAL6Q9Y274 331 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 LAMA5O15230 3695 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 FXYD6-FXYD2A0A087WZ82 144 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 A0A1W2PR80 420 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 TSPAN4O14817 238 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 SS18L1O75177 396 aaPredicted RBP13.47□□□□□ -0.25
CLN3-251ENST00000636853 CA11O75493 328 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 IL2RAP01589 272 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 CHATP28329 748 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 SORDQ00796 357 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 CHRFAM7AQ494W8 412 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 OR10AD1Q8NGE0 317 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 OR5AP2Q8NGF4 316 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 HPSE2Q8WWQ2 592 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 FXYD6Q9H0Q3 95 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 C5orf66Q9H5L9 145 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 MCRIP1C9JLW8 97 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 L7N2F9 121 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 ARPC5O15511 151 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 GPM6AP51674 278 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 AADACL3Q5VUY0 350 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 RTL6Q6ICC9 239 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 HSD17B13Q7Z5P4 300 aaPredicted RBP13.47□□□□□ -0.25
CLN3-251ENST00000636853 ZSCAN4Q8NAM6 433 aaPredicted RBP13.47□□□□□ -0.25
CLN3-251ENST00000636853 OR5M8Q8NGP6 311 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 MITD1Q8WV92 249 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 GPR132Q9UNW8 380 aa13.47□□□□□ -0.25
CLN3-251ENST00000636853 PQLC2LA1A4F0 135 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 RGS11O94810 467 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 PPP3CBP16298 524 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 SPINK2P20155 84 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 IGHV1-2P23083 117 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 OPRM1P35372 400 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 SEC61A1P61619 476 aaKnown RBP13.46□□□□□ -0.25
CLN3-251ENST00000636853 PPA1Q15181 289 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 FAHD2BQ6P2I3 314 aaPredicted RBP13.46□□□□□ -0.25
CLN3-251ENST00000636853 KCTD9Q7L273 389 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 LHFPL1Q86WI0 220 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 TMEM17Q86X19 198 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 ZDHHC23Q8IYP9 409 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 SLC30A7Q8NEW0 376 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 NANOS1Q8WY41 292 aaKnown RBP13.46□□□□□ -0.25
CLN3-251ENST00000636853 FAHD2AQ96GK7 314 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 SEC22AQ96IW7 307 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 LINC00052Q96N35 136 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 PHB2Q99623 299 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 IL36GQ9NZH8 169 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 HSF4Q9ULV5 492 aa13.46□□□□□ -0.25
CLN3-251ENST00000636853 FAM221AA4D161 298 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 HMSDA8MTL9 139 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 LILRA1O75019 489 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 LYZL6O75951 148 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 FGF2P09038 288 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 HAAOP46952 286 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 MYPOPQ86VE0 399 aaPredicted RBP13.46□□□□□ -0.26
CLN3-251ENST00000636853 SCARB1Q8WTV0 552 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 TMEM230Q96A57 120 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 ZNF75AQ96N20 296 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 CMSS1Q9BQ75 279 aaKnown RBP13.46□□□□□ -0.26
CLN3-251ENST00000636853 COQ3Q9NZJ6 369 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 PFDN2Q9UHV9 154 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 OSGIN2Q9Y236 505 aa13.46□□□□□ -0.26
CLN3-251ENST00000636853 OR5H14A6NHG9 310 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 CD300LBA8K4G0 201 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 AQP7O14520 342 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 CEACAM4O75871 244 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 CELA3BP08861 270 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 NMBP08949 121 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 RTP5Q14D33 572 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 TUSC1Q2TAM9 212 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 SPATA46Q5T0L3 261 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 FAM214BQ7L5A3 538 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 CNEP1R1Q8N9A8 125 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 SLAMF9Q96A28 289 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 MRPS24Q96EL2 167 aaKnown RBP13.45□□□□□ -0.26
CLN3-251ENST00000636853 MICU1Q9BPX6 476 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 PDCD10Q9BUL8 212 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 MUC6Q6W4X9 2439 aa13.45□□□□□ -0.26
CLN3-251ENST00000636853 TRAV14DV4A0A0A6YYC5 116 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 CEACAM18A8MTB9 384 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 FAM25EA8MYX2 175 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 ZNF732B4DXR9 585 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 DUS4LO95620 317 aaKnown RBP13.44□□□□□ -0.26
CLN3-251ENST00000636853 CST4P01036 141 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 BCL3P20749 454 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 FPR2P25090 351 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 RBM11P57052 281 aaKnown RBP13.44□□□□□ -0.26
CLN3-251ENST00000636853 TAS2R31P59538 309 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 TSC22D1Q15714 1073 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 CEACAM21Q3KPI0 293 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 TAAR6Q96RI8 345 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 RTBDNQ9BSG5 229 aaPredicted RBP13.44□□□□□ -0.26
CLN3-251ENST00000636853 LRFN3Q9BTN0 628 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 GLRX2Q9NS18 164 aa13.44□□□□□ -0.26
CLN3-251ENST00000636853 F8VVB4 439 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms