RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 A0A1W2PPE2 198 aa16.62■□□□□ 0.25
SHMT1-209ENST00000582653 A0A1W2PR64 198 aa16.62■□□□□ 0.25
SHMT1-209ENST00000582653 A0A1W2PRV1 198 aa16.62■□□□□ 0.25
SHMT1-209ENST00000582653 GATBO75879 557 aaKnown RBP16.62■□□□□ 0.25
SHMT1-209ENST00000582653 EGFL6Q8IUX8 553 aa16.62■□□□□ 0.25
SHMT1-209ENST00000582653 PPP1R35Q8TAP8 253 aa16.62■□□□□ 0.25
SHMT1-209ENST00000582653 TRUB1Q8WWH5 349 aaKnown RBP16.62■□□□□ 0.25
SHMT1-209ENST00000582653 RNFT2Q96EX2 444 aa16.62■□□□□ 0.25
SHMT1-209ENST00000582653 ADAT3Q96EY9 351 aaPredicted RBP16.62■□□□□ 0.25
SHMT1-209ENST00000582653 BORCS8Q96FH0 119 aa16.62■□□□□ 0.25
SHMT1-209ENST00000582653 HRASLS5Q96KN8 279 aa16.62■□□□□ 0.25
SHMT1-209ENST00000582653 FRRS1LQ9P0K9 344 aa16.62■□□□□ 0.25
SHMT1-209ENST00000582653 ZNF737O75373 536 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 SERPINA3P01011 423 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 CHRM2P08172 466 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 UBCP0CG48 685 aaKnown RBP16.61■□□□□ 0.25
SHMT1-209ENST00000582653 GABRA5P31644 462 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 DLX6P56179 175 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 EDDM3BP56851 147 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 OR12D2P58182 307 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 NANOS3P60323 173 aaKnown RBP16.61■□□□□ 0.25
SHMT1-209ENST00000582653 LRRC75BQ2VPJ9 315 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 CRIP3Q6Q6R5 217 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 LHFPL4Q7Z7J7 247 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 CCDC54Q8NEL0 328 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 OR2G2Q8NGZ5 317 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 IL36RNQ9UBH0 155 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 SIGLEC9Q9Y336 463 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 ORC6Q9Y5N6 252 aa16.61■□□□□ 0.25
SHMT1-209ENST00000582653 TGP01266 2768 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 IGKV1-9A0A0C4DH69 117 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 DAPL1A0PJW8 107 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 TMEM82A0PJX8 343 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 C17orf98A8MV24 154 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 J3QRE1 110 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 TSPAN15O95858 294 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 CALCBP10092 127 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 NPBWR2P48146 333 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 C2orf68Q2NKX9 166 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 C11orf88Q6PI97 169 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 FAM110DQ8TAY7 271 aaPredicted RBP16.6■□□□□ 0.25
SHMT1-209ENST00000582653 FGGYQ96C11 551 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 RAB18Q9NP72 206 aa16.6■□□□□ 0.25
SHMT1-209ENST00000582653 E9PQ18 207 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 DUSP1P28562 367 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 RBP2P50120 134 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 ALDH3A2P51648 485 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 EFNB2P52799 333 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 LGALS4P56470 323 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 SNRPGP62308 76 aaKnown RBP16.59■□□□□ 0.25
SHMT1-209ENST00000582653 HERPUD1Q15011 391 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 CNN3Q15417 329 aaKnown RBP16.59■□□□□ 0.25
SHMT1-209ENST00000582653 SLC25A30Q5SVS4 291 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 TMEM244Q5VVB8 128 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 GDPD3Q7L5L3 318 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 DYNAPQ8N1N2 210 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 CBR4Q8N4T8 237 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 DTX3Q8N9I9 347 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 PIFOQ8TCI5 191 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 PP6455Q8WZ26 134 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 EMG1Q92979 244 aaKnown RBP16.59■□□□□ 0.25
SHMT1-209ENST00000582653 C10orf35Q96D05 121 aa16.59■□□□□ 0.25
SHMT1-209ENST00000582653 RBFOX1Q9NWB1 397 aaKnown RBP16.59■□□□□ 0.25
SHMT1-209ENST00000582653 J3QLW9 94 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 SLC16A6O15403 523 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 IGHA1P01876 353 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 CSF1P09603 554 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 ZNF19P17023 458 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 ATF1P18846 271 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 BCL3P20749 454 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 POU3F4P49335 361 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 ATP1B3P54709 279 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 SNU13P55769 128 aaKnown RBP16.58■□□□□ 0.24
SHMT1-209ENST00000582653 MTCP1P56278 107 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 EDDM3AQ14507 147 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 PLA1AQ53H76 456 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 HIST2H2BDQ6DRA6 164 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 Q6ZTK2 550 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 KCTD20Q7Z5Y7 419 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 TPRX1Q8N7U7 411 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 OR52N4Q8NGI2 321 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 OR10AC1Q8NH08 325 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 SNX22Q96L94 193 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 MBOAT4Q96T53 435 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 CHST6Q9GZX3 395 aa16.58■□□□□ 0.24
SHMT1-209ENST00000582653 RANBP3Q9H6Z4 567 aaPredicted RBP16.58■□□□□ 0.24
SHMT1-209ENST00000582653 MEGF11A6BM72 1044 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 FAM90A8PA6NJQ4 464 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 HAND1O96004 215 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 ISG15P05161 165 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 ZNF728P0DKX0 622 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 AZGP1P25311 298 aaKnown RBP16.57■□□□□ 0.24
SHMT1-209ENST00000582653 RAB13P51153 203 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 ACTC1P68032 377 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 ACTA1P68133 377 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 MEDAGQ5VYS4 303 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 FDX2Q6P4F2 183 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 LIAT1Q6ZQX7 453 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 TCF23Q7RTU1 214 aa16.57■□□□□ 0.24
SHMT1-209ENST00000582653 RNF144BQ7Z419 303 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms