RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 CDRT1O95170 752 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 FOSL1P15407 271 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 FGF9P31371 208 aaPredicted RBP18.14■□□□□ 0.49
SNX1-210ENST00000560260 PTGFRP43088 359 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 ZNF841Q6ZN19 808 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 ZNF788Q6ZQV5 615 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 FGFRL1Q8N441 504 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 CD177Q8N6Q3 437 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 PXT1Q8NFP0 134 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 OR4D6Q8NGJ1 314 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 OR10K1Q8NGX5 313 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 NEIL1Q96FI4 390 aaPredicted RBP18.14■□□□□ 0.49
SNX1-210ENST00000560260 CPNE2Q96FN4 548 aaPredicted RBP18.14■□□□□ 0.49
SNX1-210ENST00000560260 GAFA1Q96PS6 74 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 CHCHD6Q9BRQ6 235 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 RNF167Q9H6Y7 350 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 LPAR2Q9HBW0 351 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 MIOXQ9UGB7 285 aa18.14■□□□□ 0.49
SNX1-210ENST00000560260 KIAA1324LA8MWY0 1029 aaPredicted RBP18.13■□□□□ 0.49
SNX1-210ENST00000560260 CYB5AP00167 134 aa18.13■□□□□ 0.49
SNX1-210ENST00000560260 TFAP2AP05549 437 aa18.13■□□□□ 0.49
SNX1-210ENST00000560260 CD37P11049 281 aa18.13■□□□□ 0.49
SNX1-210ENST00000560260 ZFP36P26651 326 aaKnown RBP18.13■□□□□ 0.49
SNX1-210ENST00000560260 KCNJ8Q15842 424 aa18.13■□□□□ 0.49
SNX1-210ENST00000560260 ATPAF1Q5TC12 328 aaPredicted RBP18.13■□□□□ 0.49
SNX1-210ENST00000560260 CDH26Q8IXH8 852 aa18.13■□□□□ 0.49
SNX1-210ENST00000560260 OR13F1Q8NGS4 319 aa18.13■□□□□ 0.49
SNX1-210ENST00000560260 C1orf147Q96MC9 270 aaPredicted RBP18.13■□□□□ 0.49
SNX1-210ENST00000560260 GSX1Q9H4S2 264 aaPredicted RBP18.13■□□□□ 0.49
SNX1-210ENST00000560260 KAAG1Q9UBP8 84 aa18.13■□□□□ 0.49
SNX1-210ENST00000560260 AK6Q9Y3D8 172 aaKnown RBP18.13■□□□□ 0.49
SNX1-210ENST00000560260 RFPL4AA6NLU0 287 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 RFPL4AL1F8VTS6 287 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 KNG1P01042 644 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 PRKACAP17612 351 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 ALDH3B2P48448 385 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 PITPNBP48739 271 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 GZMKP49863 264 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 SNU13P55769 128 aaKnown RBP18.12■□□□□ 0.49
SNX1-210ENST00000560260 Q8IYB0 196 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 FAM58AQ8N1B3 248 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 OR8B3Q8NGG8 313 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 OR8B2Q96RD0 313 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 SLITRK2Q9H156 845 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 HMG20AQ9NP66 347 aa18.12■□□□□ 0.49
SNX1-210ENST00000560260 MRPS28Q9Y2Q9 187 aaKnown RBP18.12■□□□□ 0.49
SNX1-210ENST00000560260 ABCA1O95477 2261 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.11■□□□□ 0.491e-6■■■■□ 23.4
SNX1-210ENST00000560260 CSPG4Q6UVK1 2322 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 A0A1W2PP11 408 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 MEGF11A6BM72 1044 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 A8MXK9 166 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 PHF1O43189 567 aaPredicted RBP18.11■□□□□ 0.49
SNX1-210ENST00000560260 NDUFA2O43678 99 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 LY6G6DO95868 133 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 DGUOKQ16854 277 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 CENPOQ9BU64 300 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 OR14J1Q9UGF5 321 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 SSR3Q9UNL2 185 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 ING4Q9UNL4 249 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 MAB21L2Q9Y586 359 aa18.11■□□□□ 0.49
SNX1-210ENST00000560260 TRAV1-2A0A0B4J238 106 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 LOC100506127A0A0U1RQW1 187 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 SIGLEC5O15389 551 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 TMPRSS2O15393 492 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 HEXAP06865 529 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 DUSP1P28562 367 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 GABRA2P47869 451 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 OR10A3P58181 314 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 C1orf100Q5SVJ3 147 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 WDR25Q64LD2 544 aaPredicted RBP18.1■□□□□ 0.49
SNX1-210ENST00000560260 GLIPR1L1Q6UWM5 242 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 NR2C2APQ86WQ0 139 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 LINC01356Q8N9X3 169 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 PNLDC1Q8NA58 520 aaKnown RBP18.1■□□□□ 0.49
SNX1-210ENST00000560260 Q8NFD4 153 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 SDSLQ96GA7 329 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 UQCC2Q9BRT2 126 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 DNTTIP1Q9H147 329 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 ELL3Q9HB65 397 aaPredicted RBP18.1■□□□□ 0.49
SNX1-210ENST00000560260 IL36GQ9NZH8 169 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 ARHGAP32A7KAX9 2087 aa18.1■□□□□ 0.49
SNX1-210ENST00000560260 NKX6-3A6NJ46 265 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 DVL1O14640 695 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 MYL9P24844 172 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 PRDX2P32119 198 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 TGFBR1P36897 503 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 FGF12P61328 243 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 LCN2P80188 198 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 IKZF1Q13422 519 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 ESCO2Q56NI9 601 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 GLT8D1Q68CQ7 371 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 CYB5R2Q6BCY4 276 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 AWAT2Q6E213 333 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 ELP2Q6IA86 826 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 FAM166AQ6J272 317 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 NLRC3Q7RTR2 1065 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 FUNDC2Q9BWH2 189 aa18.09■□□□□ 0.49
SNX1-210ENST00000560260 SSBP3Q9BWW4 388 aaPredicted RBP18.09■□□□□ 0.49
SNX1-210ENST00000560260 METTL9Q9H1A3 318 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms