RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 F5H0A9 414 aaPredicted RBP8.42□□□□□ -1.06
USP3-216ENST00000559873 H3BUI4 141 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.42□□□□□ -1.06
USP3-216ENST00000559873 WNT9BO14905 357 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 GPR37O15354 613 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 NDUFB3O43676 98 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 AIREO43918 545 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 GYPAP02724 150 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 PRKACAP17612 351 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 BCL3P20749 454 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 GADD45AP24522 165 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 HTR2CP28335 458 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 GABRA2P47869 451 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 FGF12P61328 243 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 GNB2P62879 340 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 C11orf91Q3C1V1 193 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 LRRC10Q5BKY1 277 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 ATPAF1Q5TC12 328 aaPredicted RBP8.42□□□□□ -1.06
USP3-216ENST00000559873 CYB5R2Q6BCY4 276 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 ELP2Q6IA86 826 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 LRRTM1Q86UE6 522 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 TPRA1Q86W33 373 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 LINC01356Q8N9X3 169 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 ANGPTL6Q8NI99 470 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 PPP1R35Q8TAP8 253 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 TBC1D15Q8TC07 691 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 YIPF6Q96EC8 236 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 CNTD2Q9H8S5 307 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 HMG20AQ9NP66 347 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 RBFOX1Q9NWB1 397 aaKnown RBP8.42□□□□□ -1.06
USP3-216ENST00000559873 OR14J1Q9UGF5 321 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 ING4Q9UNL4 249 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 V9GY05 133 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 CSPG4Q6UVK1 2322 aa8.42□□□□□ -1.06
USP3-216ENST00000559873 MAP1AP78559 2803 aaPredicted RBP8.41□□□□□ -1.06
USP3-216ENST00000559873 IGKV1-12A0A0C4DH73 117 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 SLC17A2O00624 439 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 SIGLEC5O15389 551 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 NOL3O60936 208 aaKnown RBP8.41□□□□□ -1.06
USP3-216ENST00000559873 HTR3BO95264 441 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 HAND1O96004 215 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 IGKV1D-12P01611 117 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 MSMBP08118 114 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 CHRM2P08172 466 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 WNT2P09544 360 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 PSG2P11465 335 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 GTF2F2P13984 249 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 ZNF16P17020 682 aaPredicted RBP8.41□□□□□ -1.06
USP3-216ENST00000559873 ADRA2CP18825 462 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 RAB3BP20337 219 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 SERPINA2P20848 420 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 LMO4P61968 165 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 HNRNPA0Q13151 305 aaKnown RBP8.41□□□□□ -1.06
USP3-216ENST00000559873 IL13RA2Q14627 380 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 RAB11BQ15907 218 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 DGUOKQ16854 277 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 SLC22A6Q4U2R8 563 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 CD276Q5ZPR3 534 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 FAM166AQ6J272 317 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 GLIPR1L1Q6UWM5 242 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 ASCL4Q6XD76 172 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 ZNF788Q6ZQV5 615 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 LINC00596Q86U02 117 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 GLCCI1Q86VQ1 547 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 BATF2Q8N1L9 274 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 CIARTQ8N365 385 aaPredicted RBP8.41□□□□□ -1.06
USP3-216ENST00000559873 ZNF561Q8N587 486 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 CHST4Q8NCG5 386 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 MAPK1IP1LQ8NDC0 245 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 TMEM185AQ8NFB2 350 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 MRPS24Q96EL2 167 aaKnown RBP8.41□□□□□ -1.06
USP3-216ENST00000559873 SDSLQ96GA7 329 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 C1orf159Q96HA4 380 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 CCL13Q99616 98 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 FAM234AQ9H0X4 552 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 OR51E2Q9H255 320 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 PPIL3Q9H2H8 161 aaKnown RBP8.41□□□□□ -1.06
USP3-216ENST00000559873 SEBOXQ9HB31 216 aaPredicted RBP8.41□□□□□ -1.06
USP3-216ENST00000559873 ZNF222Q9UK12 451 aa8.41□□□□□ -1.06
USP3-216ENST00000559873 AK6Q9Y3D8 172 aaKnown RBP8.41□□□□□ -1.06
USP3-216ENST00000559873 VPS13CQ709C8 3753 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 ABCA1O95477 2261 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 IGKV1D-17A0A075B6S4 117 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 TRAV20A0A0B4J274 112 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 RFPL4AA6NLU0 287 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 RFPL4AL1F8VTS6 287 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 SH2D1BO14796 132 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 SLC22A1O15245 554 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 CD5LO43866 347 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 TMEM127O75204 238 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 CDRT1O95170 752 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 BPNT1O95861 308 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 ECDO95905 644 aaPredicted RBP8.4□□□□□ -1.06
USP3-216ENST00000559873 SFTPBP07988 381 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 IGHV4-31P0DP07 118 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 ZNF44P15621 663 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 GATA3P23771 443 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 IL2RGP31785 369 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 PRDX2P32119 198 aa8.4□□□□□ -1.06
USP3-216ENST00000559873 RPL5P46777 297 aaKnown RBP8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms