RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 CLDN18P56856 261 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 SLC35A1P78382 337 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 BTN1A1Q13410 526 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 ZNF273Q14593 569 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 TESK1Q15569 626 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 ZNF239Q16600 458 aaKnown RBP7.84□□□□□ -1.15
COL12A1-208ENST00000486533 NKPD1Q17RQ9 610 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 C2orf68Q2NKX9 166 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 NKAPLQ5M9Q1 402 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 ZNF529Q6P280 563 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 P4HA3Q7Z4N8 544 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 COMMD2Q86X83 199 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 LYPD6Q86Y78 171 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 LINC00346Q8IVM7 164 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 SVBPQ8N300 66 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 TMEM185AQ8NFB2 350 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 OR4D6Q8NGJ1 314 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 OR51A2Q8NGJ7 313 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 OR5H2Q8NGV7 314 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 OR6X1Q8NH79 312 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 FAM222BQ8WU58 562 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 RNF138Q8WVD3 245 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 RNF141Q8WVD5 230 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 PPP1R1CQ8WVI7 109 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 MARC2Q969Z3 335 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 RAB3CQ96E17 227 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 S100A13Q99584 98 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 SFXN3Q9BWM7 321 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 RBM24Q9BX46 236 aaKnown RBP7.84□□□□□ -1.15
COL12A1-208ENST00000486533 TMEM59Q9BXS4 323 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 CHST6Q9GZX3 395 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.84□□□□□ -1.15
COL12A1-208ENST00000486533 CLCF1Q9UBD9 225 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 VSIG4Q9Y279 399 aa7.84□□□□□ -1.15
COL12A1-208ENST00000486533 MRPS18CQ9Y3D5 142 aaKnown RBP7.84□□□□□ -1.15
COL12A1-208ENST00000486533 TEX13DA0A0J9YY54 714 aaPredicted RBP7.83□□□□□ -1.16
COL12A1-208ENST00000486533 LOC102725191A0A1B0GVB3 256 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 CEACAM18A8MTB9 384 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 ZIC3O60481 467 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 MTRF1O75570 445 aaKnown RBP7.83□□□□□ -1.16
COL12A1-208ENST00000486533 APOC3P02656 99 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 CRHP06850 196 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 HCKP08631 526 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 CCL1P22362 96 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 THBS4P35443 961 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 OR3A2P47893 321 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 ZNF133P52736 654 aaPredicted RBP7.83□□□□□ -1.16
COL12A1-208ENST00000486533 LSM6P62312 80 aaKnown RBP7.83□□□□□ -1.16
COL12A1-208ENST00000486533 FLI1Q01543 452 aaPredicted RBP7.83□□□□□ -1.16
COL12A1-208ENST00000486533 FOXF1Q12946 379 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 PPP1R1AQ13522 171 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 SMCO1Q147U7 214 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 PXDC1Q5TGL8 231 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 ASPHD2Q6ICH7 369 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 SPNS3Q6ZMD2 512 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 IL34Q6ZMJ4 242 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 HOGA1Q86XE5 327 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 ANGPTL5Q86XS5 388 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 SPAG16Q8N0X2 631 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 GTPBP8Q8N3Z3 284 aaPredicted RBP7.83□□□□□ -1.16
COL12A1-208ENST00000486533 FADS6Q8N9I5 356 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 OR2M3Q8NG83 312 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 OR13C9Q8NGT0 318 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 TERB2Q8NHR7 220 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 LINC01560Q8TB33 94 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 FBXW5Q969U6 566 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 MRPS24Q96EL2 167 aaKnown RBP7.83□□□□□ -1.16
COL12A1-208ENST00000486533 FOXN4Q96NZ1 517 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 OXGR1Q96P68 337 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 GPER1Q99527 375 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 RTN4RQ9BZR6 473 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 LIME1Q9H400 295 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 PCDHB16Q9NRJ7 776 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 ZFP57Q9NU63 452 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 DNAJB11Q9UBS4 358 aa7.83□□□□□ -1.16
COL12A1-208ENST00000486533 C14orf166Q9Y224 244 aaKnown RBP7.83□□□□□ -1.16
COL12A1-208ENST00000486533 ZFHX3Q15911 3703 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 PCNX3Q9H6A9 2034 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 TRBV6-7A0A0A0MS04 114 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 SLC22A20A6NK97 555 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 POM121CA8CG34 1229 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 SERPINE3A8MV23 424 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 H3BML4 177 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 TOR1AO14656 332 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 VAMP5O95183 116 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 SFT2D2O95562 160 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 CSN2P05814 226 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 HIST1H1DP16402 221 aaKnown RBP7.82□□□□□ -1.16
COL12A1-208ENST00000486533 ZNF43P17038 809 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 AMY2BP19961 511 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 HRH1P35367 487 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 B3GALT5-AS1P59052 145 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 QRFPP83859 136 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 FMODQ06828 376 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 ECH1Q13011 328 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 ARFRP1Q13795 201 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 ETFDHQ16134 617 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 KCTD9Q7L273 389 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 BIVMQ86UB2 503 aa7.82□□□□□ -1.16
COL12A1-208ENST00000486533 CNEP1R1Q8N9A8 125 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms