RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 EBNA1BP2Q99848 306 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 FAAP24Q9BTP7 215 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 EMC6Q9BV81 110 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 SLC25A2Q9BXI2 301 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 SLC19A3Q9BZV2 496 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 TMEM27Q9HBJ8 222 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 DAZ3Q9NR90 486 aaKnown RBP3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 CCL28Q9NRJ3 127 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 PCYOX1Q9UHG3 505 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 ARL2BPQ9Y2Y0 163 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 OBSCNQ5VST9 7968 aa3.63□□□□□ -1.83
CCDC88A-206ENST00000430086 CEACAM18A8MTB9 384 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 I3L4J1 428 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 AZIN1O14977 448 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 RP2O75695 350 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 CTDNEP1O95476 244 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 KLF8O95600 359 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 IFNA16P05015 189 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 AKR1C4P17516 323 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 PSMA1P25786 263 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 IFNGR2P38484 337 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 CDKN2BP42772 138 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 GCLMP48507 274 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 PSMD7P51665 324 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 OR4D2P58180 307 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 PPIDQ08752 370 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 INCA1Q0VD86 236 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 SRSF6Q13247 344 aaKnown RBP3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 MPPED2Q15777 294 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 CASC10Q5T4H9 136 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 SYPL2Q5VXT5 272 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 LINC00173Q6ZV60 143 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 FAM183BPQ6ZVS7 135 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 FAM19A5Q7Z5A7 132 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 AKAP14Q86UN6 197 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 CPNE9Q8IYJ1 553 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 LGI3Q8N145 548 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 STK40Q8N2I9 435 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 FAM151AQ8WW52 585 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 DCUN1D4Q92564 292 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 TLCD1Q96CP7 247 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 PPP1R36Q96LQ0 422 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 PACRGQ96M98 296 aaPredicted RBP3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 NRIP2Q9BQI9 281 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 TAPBPLQ9BX59 468 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 CDCA4Q9BXL8 241 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 SLC22A4Q9H015 551 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 OR51B6Q9H340 312 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 TMEM100Q9NV29 134 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 NEU3Q9UQ49 428 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 TP53TG1Q9Y2A0 90 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 PCDH11XQ9BZA7 1347 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 THSD7BQ9C0I4 1608 aa3.62□□□□□ -1.83
CCDC88A-206ENST00000430086 NPHP4O75161 1426 aaPredicted RBP3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 ADGRL3Q9HAR2 1447 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 IGHV1-69DA0A0B4J2H0 117 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 GATBO75879 557 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 BGLAPP02818 100 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 TCRBP04435 133 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 CD99P14209 185 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 CXCR1P25024 350 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 PAX6P26367 422 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 APLNRP35414 380 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 CD79BP40259 229 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 CYB561P49447 251 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 NDUFA8P51970 172 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 SYNJ2BPP57105 145 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 ERVS71-1P61550 626 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 LSM6P62312 80 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 POLR2GP62487 172 aaKnown RBP eCLIP3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 IFITM3Q01628 133 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 PDK2Q15119 407 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 TCEAL5Q5H9L2 206 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 METTL21CQ5VZV1 264 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 CASP12Q6UXS9 341 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 RTL4Q6ZR62 310 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 RNF165Q6ZSG1 346 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 Q8N9L7 120 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 C11orf72Q8NBR9 251 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 OR10G6Q8NH81 332 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 C16orf78Q8WTQ4 265 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 TCEAL3Q969E4 200 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 FAM104AQ969W3 186 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 RNF185Q96GF1 192 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 OR10C1Q96KK4 312 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 FAM19A4Q96LR4 140 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 NRTNQ99748 197 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 BCL2L14Q9BZR8 327 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 MAP1LC3AQ9H492 121 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 MRPL40Q9NQ50 206 aaKnown RBP3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 OPN4Q9UHM6 478 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 HEBP2Q9Y5Z4 205 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 GTF3C1Q12789 2109 aa3.61□□□□□ -1.83
CCDC88A-206ENST00000430086 A0A0J9YXV3 536 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 H3BQV1 296 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 UPK2O00526 184 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 TAAR5O14804 337 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 NDUFS5O43920 106 aa3.6□□□□□ -1.83
CCDC88A-206ENST00000430086 CA11O75493 328 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms