RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 OR5AC2Q9NZP5 309 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 MCTS1Q9ULC4 181 aaKnown RBP9.29□□□□□ -0.92
CUX1-205ENST00000425244 PCDHB10Q9UN67 800 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 IGF2RP11717 2491 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 BSNQ9UPA5 3926 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 DNAJC13O75165 2243 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 PINLYPA6NC86 204 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 MSGN1A6NI15 193 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 ZNF205O95201 554 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 CLN3Q13286 438 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 TAF9Q16594 264 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 C20orf196Q8IYI0 205 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 EIF4E3Q8N5X7 224 aaKnown RBP9.29□□□□□ -0.92
CUX1-205ENST00000425244 SEMA6DQ8NFY4 1073 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 OR51F2Q8NH61 342 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 TMED6Q8WW62 240 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 PHYHIPLQ96FC7 376 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 PIK3IP1Q96FE7 263 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 OR10C1Q96KK4 312 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 LDAHQ9H6V9 325 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 ZNF581Q9P0T4 197 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 ABI3Q9P2A4 366 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 GHRLQ9UBU3 117 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 FOXD3Q9UJU5 478 aaPredicted RBP9.29□□□□□ -0.92
CUX1-205ENST00000425244 OSGIN2Q9Y236 505 aa9.29□□□□□ -0.92
CUX1-205ENST00000425244 NCKAP5O14513 1909 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 CHD8Q9HCK8 2581 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 ZNF407Q9C0G0 2248 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 TMEM238LA0A1B0GVL6 79 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 SERPINE3A8MV23 424 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 CXCL13O43927 109 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 NEURL1O76050 574 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 IGLV3-1P01715 115 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 CSTBP04080 98 aaKnown RBP9.28□□□□□ -0.92
CUX1-205ENST00000425244 CARD18P57730 90 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 RSU1Q15404 277 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 DRAM2Q6UX65 266 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 TMEM200AQ86VY9 491 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 LRRC46Q96FV0 321 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 REEP6Q96HR9 211 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 IP6K3Q96PC2 410 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 ZNF2Q9BSG1 426 aaPredicted RBP9.28□□□□□ -0.92
CUX1-205ENST00000425244 RAB18Q9NP72 206 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 GLS2Q9UI32 602 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 C14orf166Q9Y224 244 aaKnown RBP9.28□□□□□ -0.92
CUX1-205ENST00000425244 GJE1A6NN92 205 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 DHRS7CA6NNS2 312 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 FABP1P07148 127 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 TPT1P13693 172 aaKnown RBP9.28□□□□□ -0.92
CUX1-205ENST00000425244 GDF1P27539 372 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 NTF4P34130 210 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 HTR5AP47898 357 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 HGFACQ04756 655 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 RAB32Q13637 225 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 FAM27BQ5VT28 67 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 ZNF585AQ6P3V2 769 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 BRICD5Q6PL45 260 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 LHFPL1Q86WI0 220 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 FAAP24Q9BTP7 215 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 SH2D2AQ9NP31 389 aa9.28□□□□□ -0.92
CUX1-205ENST00000425244 TEX13DA0A0J9YY54 714 aaPredicted RBP9.27□□□□□ -0.93
CUX1-205ENST00000425244 FAM166BA8MTA8 275 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 FOXI3A8MTJ6 420 aaPredicted RBP9.27□□□□□ -0.93
CUX1-205ENST00000425244 IGHV3-9P01782 118 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 OTX1P32242 354 aaPredicted RBP9.27□□□□□ -0.93
CUX1-205ENST00000425244 OPRM1P35372 400 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 RRADP55042 308 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 ARG2P78540 354 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 MRPS34P82930 218 aaKnown RBP9.27□□□□□ -0.93
CUX1-205ENST00000425244 TSC22D1Q15714 1073 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 WIPI1Q5MNZ9 446 aaPredicted RBP9.27□□□□□ -0.93
CUX1-205ENST00000425244 FOXL2NBQ6ZUU3 175 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 AAED1Q7RTV5 226 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 PEG10Q86TG7 708 aaKnown RBP9.27□□□□□ -0.93
CUX1-205ENST00000425244 GPR137CQ8N3F9 429 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 FDCSPQ8NFU4 85 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 DYRK2Q92630 601 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 PPP1R14DQ9NXH3 145 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 SVILO95425 2214 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 FAM221AA4D161 298 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 ZNF32P17041 273 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 RBMXP38159 391 aaKnown RBP9.27□□□□□ -0.93
CUX1-205ENST00000425244 RAC3P60763 192 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 HIST1H3AP68431 136 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 RAB35Q15286 201 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 HIST2H3PS2Q5TEC6 136 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 BEND4Q6ZU67 534 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 HIST2H3AQ71DI3 136 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 BAP18Q8IXM2 172 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 BATF2Q8N1L9 274 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 CLRN3Q8NCR9 226 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 OR1F12Q8NHA8 337 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 DNTTIP1Q9H147 329 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 METTL9Q9H1A3 318 aa9.27□□□□□ -0.93
CUX1-205ENST00000425244 CEACAM18A8MTB9 384 aa9.26□□□□□ -0.93
CUX1-205ENST00000425244 PTGER4P35408 488 aa9.26□□□□□ -0.93
CUX1-205ENST00000425244 ALDH3B1P43353 468 aa9.26□□□□□ -0.93
CUX1-205ENST00000425244 RTP5Q14D33 572 aa9.26□□□□□ -0.93
CUX1-205ENST00000425244 SLC16A14Q7RTX9 510 aa9.26□□□□□ -0.93
CUX1-205ENST00000425244 SULF2Q8IWU5 870 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms