RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 A0A1W2PPE3 182 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 PLPP3O14495 311 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 PCK2Q16822 640 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 MICBQ29980 383 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 PRR27Q6MZM9 219 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 CLEC18BQ6UXF7 455 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 BHLHE23Q8NDY6 225 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 SGCZQ96LD1 299 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 HDHD3Q9BSH5 251 aaPredicted RBP10.56□□□□□ -0.72
HMGB1-206ENST00000405805 ULBP2Q9BZM5 246 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 ZCCHC4Q9H5U6 513 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 FKBP11Q9NYL4 201 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 OR5AC2Q9NZP5 309 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 TNFSF18Q9UNG2 199 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 TRBV5-5A0A0J9YX44 114 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 ZNF217O75362 1048 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 C1QL1O75973 258 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 TFPI2P48307 235 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 FOXK1P85037 733 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 DMRTC2Q8IXT2 367 aaPredicted RBP10.56□□□□□ -0.72
HMGB1-206ENST00000405805 OR13C8Q8NGS7 320 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 GPBAR1Q8TDU6 330 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 DMRTA2Q96SC8 542 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 EIF4E2O60573 245 aaKnown RBP10.56□□□□□ -0.72
HMGB1-206ENST00000405805 OTX2P32243 289 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 BPIFB3P59826 476 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 HTD2P86397 168 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 FUT7Q11130 342 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 COL5A1-AS1Q5SY13 56 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 TVP23CQ96ET8 276 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 SDSLQ96GA7 329 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 TBX15Q96SF7 602 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 NMNAT2Q9BZQ4 307 aa10.56□□□□□ -0.72
HMGB1-206ENST00000405805 TRAV14DV4A0A0A6YYC5 116 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 FBLL1A6NHQ2 334 aaKnown RBP10.55□□□□□ -0.72
HMGB1-206ENST00000405805 H3BP45 60 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 MPGP29372 298 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 SRSF3P84103 164 aaKnown RBP10.55□□□□□ -0.72
HMGB1-206ENST00000405805 MYBPHQ13203 477 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 MFAP5Q13361 173 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 DHRS7BQ6IAN0 325 aaPredicted RBP10.55□□□□□ -0.72
HMGB1-206ENST00000405805 OR1L3Q8NH93 324 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 FRG2CA6NGY1 282 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 PRSS47A8MTI9 375 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 COX5BP10606 129 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 DUSP1P28562 367 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 DCAF7P61962 342 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 JMJD6Q6NYC1 403 aaPredicted RBP10.55□□□□□ -0.72
HMGB1-206ENST00000405805 DPPA3Q6W0C5 159 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 NOL4LQ96MY1 436 aaPredicted RBP10.55□□□□□ -0.72
HMGB1-206ENST00000405805 CIB3Q96Q77 187 aaPredicted RBP10.55□□□□□ -0.72
HMGB1-206ENST00000405805 RYDENQ9NUL5 291 aaKnown RBP10.55□□□□□ -0.72
HMGB1-206ENST00000405805 FLVCR1Q9Y5Y0 555 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 MSGN1A6NI15 193 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 M0QZK8 103 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 GPR137BO60478 399 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 GGCTO75223 188 aaKnown RBP10.55□□□□□ -0.72
HMGB1-206ENST00000405805 CHRM2P08172 466 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 POU2F2P09086 479 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.55□□□□□ -0.72
HMGB1-206ENST00000405805 UBALD1Q8TB05 177 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 C1orf123Q9NWV4 160 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 RARRES3Q9UL19 164 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 IGKV1D-43A0A0B4J1Z2 117 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 PNLIPP16233 465 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 PTCRAQ6ISU1 281 aaPredicted RBP10.55□□□□□ -0.72
HMGB1-206ENST00000405805 KCNIP4Q6PIL6 250 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 CATSPERDQ86XM0 798 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 ZNF695Q8IW36 515 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 C9orf40Q8IXQ3 194 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 OR10G3Q8NGC4 313 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 SLC35B3Q9H1N7 401 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 UCK1Q9HA47 277 aa10.55□□□□□ -0.72
HMGB1-206ENST00000405805 RNF212BA8MTL3 300 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 SCRG1O75711 98 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 WISP1O95388 367 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 DUS4LO95620 317 aaKnown RBP10.54□□□□□ -0.72
HMGB1-206ENST00000405805 IGHV4-34P06331 123 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 ERVS71-1P61550 626 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 ECH1Q13011 328 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 C1orf185Q5T7R7 199 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 CDCP2Q5VXM1 449 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 MOB3CQ70IA8 216 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 OR5L2Q8NGL0 311 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 BORCS7Q96B45 105 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 ZNF845Q96IR2 970 aaPredicted RBP10.54□□□□□ -0.72
HMGB1-206ENST00000405805 FAAP24Q9BTP7 215 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 ZNF426Q9BUY5 554 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 AK3Q9UIJ7 227 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 RAB27BO00194 218 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 NDUFS8O00217 210 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 DVL1O14640 695 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 BGLAPP02818 100 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 PGA4P0DJD7 388 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 PGA5P0DJD9 388 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 OR5H8P0DN80 308 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 PIGPP57054 158 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 DHODHQ02127 395 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 PAX5Q02548 391 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 PYY3Q5JQD4 70 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms