RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 FBLN5Q9UBX5 448 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 NPTNQ9Y639 398 aa15.21■□□□□ 0.03
SDC1-203ENST00000403076 METTL21EPA6NDL7 271 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 FAM25AB3EWG3 89 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 FAM25CB3EWG5 89 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 FAM25GB3EWG6 89 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 LDLRAD4O15165 306 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 ZNF205O95201 554 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 LHBP01229 141 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 RAB6AP20340 208 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 S100A5P33763 92 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 EFNB2P52799 333 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 FGF12P61328 243 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 MRPS11P82912 194 aaKnown RBP15.2■□□□□ 0.02
SDC1-203ENST00000403076 HOXA4Q00056 320 aaPredicted RBP15.2■□□□□ 0.02
SDC1-203ENST00000403076 PLA2G7Q13093 441 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 UBE2NLQ5JXB2 153 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 FAM201AQ5SY85 155 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 SFRP4Q6FHJ7 346 aaPredicted RBP15.2■□□□□ 0.02
SDC1-203ENST00000403076 ACP7Q6ZNF0 438 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 PEG10Q86TG7 708 aaKnown RBP15.2■□□□□ 0.02
SDC1-203ENST00000403076 CDH24Q86UP0 819 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 DEFB108BQ8NET1 73 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 OR51T1Q8NGJ9 327 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 MRPS24Q96EL2 167 aaKnown RBP15.2■□□□□ 0.02
SDC1-203ENST00000403076 ATG5Q9H1Y0 275 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 RHBDL2Q9NX52 303 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 ADAM30Q9UKF2 790 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 ST3GAL6Q9Y274 331 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 PEX16Q9Y5Y5 336 aa15.2■□□□□ 0.02
SDC1-203ENST00000403076 PPIAL4EA0A075B759 164 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 IGHV3OR15-7A0A075B7D8 119 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 PPIAL4DF5H284 164 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 CLPXO76031 633 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 IGHV4-39P01824 125 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 PPIAL4FP0DN26 164 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 RPS27AP62979 156 aaKnown RBP15.19■□□□□ 0.02
SDC1-203ENST00000403076 FAM189A2Q15884 450 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 C19orf18Q8NEA5 215 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 Q8NFD4 153 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 PTX4Q96A99 478 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 PHF21AQ96BD5 680 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 SEH1LQ96EE3 360 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 BARX1Q9HBU1 254 aaPredicted RBP15.19■□□□□ 0.02
SDC1-203ENST00000403076 OR14J1Q9UGF5 321 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 PPIAL4AQ9Y536 164 aa15.19■□□□□ 0.02
SDC1-203ENST00000403076 CLDN25C9JDP6 229 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 SSX4O60224 188 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 DUSP1P28562 367 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 TAF9Q16594 264 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 MICBQ29980 383 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 PIGYQ3MUY2 71 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 CMTM4Q8IZR5 234 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 S100A16Q96FQ6 103 aaKnown RBP15.18■□□□□ 0.02
SDC1-203ENST00000403076 PERPQ96FX8 193 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 HES4Q9HCC6 221 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 ZNF701Q9NV72 531 aaPredicted RBP15.18■□□□□ 0.02
SDC1-203ENST00000403076 NLKQ9UBE8 527 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 IL36RNQ9UBH0 155 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 GLS2Q9UI32 602 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 LRBAP50851 2863 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 DCHS2Q6V1P9 2916 aa15.18■□□□□ 0.02
SDC1-203ENST00000403076 PPIHO43447 177 aaKnown RBP15.17■□□□□ 0.02
SDC1-203ENST00000403076 APOA1P02647 267 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 ELK1P19419 428 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 GABRR1P24046 479 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 PITPNBP48739 271 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 PTH2RP49190 550 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 VEGFCP49767 419 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 RBM11P57052 281 aaKnown RBP15.17■□□□□ 0.02
SDC1-203ENST00000403076 SCN1BQ07699 218 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 METAP1DQ6UB28 335 aaPredicted RBP15.17■□□□□ 0.02
SDC1-203ENST00000403076 LAX1Q8IWV1 398 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 OR5T2Q8NGG2 359 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 RAB40AQ8WXH6 277 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 SLC25A38Q96DW6 304 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 TIMD4Q96H15 378 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 Q96M66 194 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 CMTM3Q96MX0 182 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 LPAR5Q9H1C0 372 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 CHODLQ9H9P2 273 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 WIPI2Q9Y4P8 454 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 CENPEQ02224 2701 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 TRAV38-1A0A0B4J264 116 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 OOEPA6NGQ2 149 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.17■□□□□ 0.02
SDC1-203ENST00000403076 LGALS8O00214 317 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 GEMIN2O14893 280 aaKnown RBP15.17■□□□□ 0.02
SDC1-203ENST00000403076 RP2O75695 350 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 EIF4EP06730 217 aaKnown RBP15.17■□□□□ 0.02
SDC1-203ENST00000403076 CPT2P23786 658 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 IKZF1Q13422 519 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 PDCD1Q15116 288 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 SPIN3Q5JUX0 258 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 FAM90A1Q86YD7 464 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 OR56B1Q8NGI3 324 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 RAB1CQ92928 201 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 DIRAS2Q96HU8 199 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 NICN1Q9BSH3 213 aa15.17■□□□□ 0.02
SDC1-203ENST00000403076 ABCG5Q9H222 651 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms