RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 TMEM147Q9BVK8 224 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 EGLN1Q9GZT9 426 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 TNFSF11O14788 317 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 LANCL1O43813 399 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 ABLIM3O94929 683 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 IGHEP01854 428 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 B4GALT1P15291 398 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 FAM219AQ8IW50 185 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 EIF4E3Q8N5X7 224 aaKnown RBP10.58□□□□□ -0.72
SYNPO-202ENST00000394243 SLC37A2Q8TED4 501 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 BOD1Q96IK1 185 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 C4orf45Q96LM5 186 aa10.58□□□□□ -0.72
SYNPO-202ENST00000394243 APCSP02743 223 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 MUC1P15941 1255 aaPredicted RBP10.57□□□□□ -0.72
SYNPO-202ENST00000394243 CXCL2P19875 107 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 OR3A1P47881 315 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 SLC25A1P53007 311 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 TSPO2Q5TGU0 170 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 ZNF547Q8IVP9 402 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 OR4D9Q8NGE8 314 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 LRRC37A3O60309 1634 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 A0A087WUJ7 227 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 OR4C46A6NHA9 309 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 RPS4Y1P22090 263 aaKnown RBP10.57□□□□□ -0.72
SYNPO-202ENST00000394243 TMEM255AQ5JRV8 349 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 FAM78AQ5JUQ0 283 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 SLC7A10Q9NS82 523 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 AURKAIP1Q9NWT8 199 aaPredicted RBP10.57□□□□□ -0.72
SYNPO-202ENST00000394243 CA2P00918 260 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 MISP3Q96FF7 219 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 HSPB9Q9BQS6 159 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 TMEM140Q9NV12 185 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 RGPD8O14715 1765 aaPredicted RBP10.57□□□□□ -0.72
SYNPO-202ENST00000394243 RNF224P0DH78 156 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 PUSL1Q8N0Z8 303 aaKnown RBP10.57□□□□□ -0.72
SYNPO-202ENST00000394243 PDFQ9HBH1 243 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 SH2D2AQ9NP31 389 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 F11P03951 625 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 MELTFP08582 738 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 NOXO1Q8NFA2 376 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 DDA1Q9BW61 102 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 TECRQ9NZ01 308 aaKnown RBP10.57□□□□□ -0.72
SYNPO-202ENST00000394243 CCDC88CQ9P219 2028 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 LNP1A1A4G5 178 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 FCGR3BO75015 233 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 KLF9Q13886 244 aaPredicted RBP10.57□□□□□ -0.72
SYNPO-202ENST00000394243 PWWP2BQ6NUJ5 590 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 SLC25A42Q86VD7 318 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 OR4A4PQ8NGN8 299 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 OR2A5Q96R48 311 aa10.57□□□□□ -0.72
SYNPO-202ENST00000394243 TRIP11Q15643 1979 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 NWD2Q9ULI1 1742 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 F5H697 171 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 CORTO00230 105 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 CHST1O43916 411 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 EXT1Q16394 746 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 COX19Q49B96 90 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 KDM3BQ7LBC6 1761 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 PPM1DO15297 605 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 CBR3O75828 277 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 CRYAAP02489 173 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 CD82P27701 267 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 CSNK1EP49674 416 aaKnown RBP10.56□□□□□ -0.72
SYNPO-202ENST00000394243 ADAD2Q8NCV1 583 aaKnown RBP10.56□□□□□ -0.72
SYNPO-202ENST00000394243 OR4F17Q8NGA8 305 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 WNT2BQ93097 391 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 NEU3Q9UQ49 428 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 GCGP01275 180 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 WNT3P56703 355 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 DEFB103AP81534 67 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 FNDC7Q5VTL7 733 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 ASB16Q96NS5 453 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 NRIP2Q9BQI9 281 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 TMEM30CPA0ZSE6 113 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 RCC1P18754 421 aaPredicted RBP10.56□□□□□ -0.72
SYNPO-202ENST00000394243 SPSB1Q96BD6 273 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 EPPINO95925 133 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 SP1P08047 785 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 RAE1P78406 368 aaKnown RBP10.56□□□□□ -0.72
SYNPO-202ENST00000394243 IFITM2Q01629 132 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 TCTN1Q2MV58 587 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 MORN1Q5T089 497 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 MRPL43Q8N983 215 aaKnown RBP10.56□□□□□ -0.72
SYNPO-202ENST00000394243 METTL12A8MUP2 240 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 KLRC4-KLRK1H3BQV0 150 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 NMBP08949 121 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 CD40P25942 277 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 ZNF343Q6P1L6 599 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 SSX8Q7RTT4 187 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 RPS19BP1Q86WX3 136 aaKnown RBP10.56□□□□□ -0.72
SYNPO-202ENST00000394243 DMRT1Q9Y5R6 373 aa10.56□□□□□ -0.72
SYNPO-202ENST00000394243 BRWD1Q9NSI6 2320 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 A0A0A6YYD5 115 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 PAGE4O60829 102 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 MMP9P14780 707 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 AESQ08117 197 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 SPATA46Q5T0L3 261 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 CARFQ8N187 725 aa10.55□□□□□ -0.72
SYNPO-202ENST00000394243 MFSD2BA6NFX1 497 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms