RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SLAMF9Q96A28 289 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 C12orf43Q96C57 262 aaKnown RBP15.1■□□□□ 0.01
CLN3-239ENST00000628023 SEH1LQ96EE3 360 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 C1orf159Q96HA4 380 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 ZNF488Q96MN9 340 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 ACOT13Q9NPJ3 140 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 NLKQ9UBE8 527 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 LRCH1Q9Y2L9 728 aa15.1■□□□□ 0.01
CLN3-239ENST00000628023 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.1■□□□□ 0.017e-9■■□□□ 13.5
CLN3-239ENST00000628023 ANK3Q12955 4377 aaKnown RBP15.09■□□□□ 0.01
CLN3-239ENST00000628023 A0A1W2PPK0 400 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.09■□□□□ 0.01
CLN3-239ENST00000628023 TMPRSS2O15393 492 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 CPT2P23786 658 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 MPZP25189 248 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 RPS11P62280 158 aaKnown RBP eCLIP15.09■□□□□ 0.01
CLN3-239ENST00000628023 FAM120AOSQ5T036 256 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 LYPD2Q6UXB3 125 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 SLC36A1Q7Z2H8 476 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 SATL1Q86VE3 508 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 MKXQ8IYA7 352 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 MS4A15Q8N5U1 240 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 OR5T2Q8NGG2 359 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 OR5D18Q8NGL1 313 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 TMEM186Q96B77 213 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 GPER1Q99527 375 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 MGLLQ99685 303 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 SSBP3Q9BWW4 388 aaPredicted RBP15.09■□□□□ 0.01
CLN3-239ENST00000628023 ISYNA1Q9NPH2 558 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 RASL12Q9NYN1 266 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 CLN8Q9UBY8 286 aa15.09■□□□□ 0.01
CLN3-239ENST00000628023 TRAV20A0A0B4J274 112 aa15.08■□□□□ 0
CLN3-239ENST00000628023 SPRY1O43609 319 aaPredicted RBP15.08■□□□□ 0
CLN3-239ENST00000628023 ALX3O95076 343 aa15.08■□□□□ 0
CLN3-239ENST00000628023 WNT2P09544 360 aa15.08■□□□□ 0
CLN3-239ENST00000628023 PCMT1P22061 227 aa15.08■□□□□ 0
CLN3-239ENST00000628023 GABRA2P47869 451 aa15.08■□□□□ 0
CLN3-239ENST00000628023 DVL1P1P54792 670 aaPredicted RBP15.08■□□□□ 0
CLN3-239ENST00000628023 EMX1Q04741 257 aaPredicted RBP15.08■□□□□ 0
CLN3-239ENST00000628023 GPR50Q13585 617 aa15.08■□□□□ 0
CLN3-239ENST00000628023 KISS1Q15726 138 aa15.08■□□□□ 0
CLN3-239ENST00000628023 KCTD21Q4G0X4 260 aa15.08■□□□□ 0
CLN3-239ENST00000628023 ZNF773Q6PK81 442 aa15.08■□□□□ 0
CLN3-239ENST00000628023 OR51A2Q8NGJ7 313 aa15.08■□□□□ 0
CLN3-239ENST00000628023 ORAI1Q96D31 301 aa15.08■□□□□ 0
CLN3-239ENST00000628023 CEP19Q96LK0 163 aa15.08■□□□□ 0
CLN3-239ENST00000628023 DERL3Q96Q80 235 aa15.08■□□□□ 0
CLN3-239ENST00000628023 CCL13Q99616 98 aa15.08■□□□□ 0
CLN3-239ENST00000628023 NRIP2Q9BQI9 281 aa15.08■□□□□ 0
CLN3-239ENST00000628023 FAM192AQ9GZU8 254 aa15.08■□□□□ 0
CLN3-239ENST00000628023 HIF1ANQ9NWT6 349 aa15.08■□□□□ 0
CLN3-239ENST00000628023 OR5V1Q9UGF6 321 aa15.08■□□□□ 0
CLN3-239ENST00000628023 LRRC42Q9Y546 428 aa15.08■□□□□ 0
CLN3-239ENST00000628023 OR2AT4A6NND4 320 aa15.07■□□□□ 0
CLN3-239ENST00000628023 TRAPPC2LH3BP13 241 aa15.07■□□□□ 0
CLN3-239ENST00000628023 NOS1APO75052 506 aaPredicted RBP15.07■□□□□ 0
CLN3-239ENST00000628023 CPEP16870 476 aa15.07■□□□□ 0
CLN3-239ENST00000628023 FSTP19883 344 aa15.07■□□□□ 0
CLN3-239ENST00000628023 TPBGQ13641 420 aa15.07■□□□□ 0
CLN3-239ENST00000628023 ACSM3Q53FZ2 586 aa15.07■□□□□ 0
CLN3-239ENST00000628023 DDI2Q5TDH0 399 aa15.07■□□□□ 0
CLN3-239ENST00000628023 STUMQ69YW2 141 aa15.07■□□□□ 0
CLN3-239ENST00000628023 ACP7Q6ZNF0 438 aa15.07■□□□□ 0
CLN3-239ENST00000628023 SPARTQ8N0X7 666 aa15.07■□□□□ 0
CLN3-239ENST00000628023 FCGR1BQ92637 280 aa15.07■□□□□ 0
CLN3-239ENST00000628023 EMG1Q92979 244 aaKnown RBP15.07■□□□□ 0
CLN3-239ENST00000628023 TMEM203Q969S6 136 aa15.07■□□□□ 0
CLN3-239ENST00000628023 SMURF1Q9HCE7 757 aa15.07■□□□□ 0
CLN3-239ENST00000628023 NOX4Q9NPH5 578 aa15.07■□□□□ 0
CLN3-239ENST00000628023 TMEM138Q9NPI0 162 aa15.07■□□□□ 0
CLN3-239ENST00000628023 CTSZQ9UBR2 303 aa15.07■□□□□ 0
CLN3-239ENST00000628023 TRBV5-7A0A0A0MS05 114 aa15.06■□□□□ 0
CLN3-239ENST00000628023 TNFAIP8O95379 198 aa15.06■□□□□ 0
CLN3-239ENST00000628023 TMEM225BP0DP42 221 aa15.06■□□□□ 0
CLN3-239ENST00000628023 PSMA1P25786 263 aaKnown RBP15.06■□□□□ 0
CLN3-239ENST00000628023 PSMB9P28065 219 aa15.06■□□□□ 0
CLN3-239ENST00000628023 BDKRB2P30411 391 aa15.06■□□□□ 0
CLN3-239ENST00000628023 TGFBR2P37173 567 aa15.06■□□□□ 0
CLN3-239ENST00000628023 NPY4RP50391 375 aa15.06■□□□□ 0
CLN3-239ENST00000628023 RPS25P62851 125 aaKnown RBP15.06■□□□□ 0
CLN3-239ENST00000628023 PDZK1IP1Q13113 114 aa15.06■□□□□ 0
CLN3-239ENST00000628023 IKZF1Q13422 519 aa15.06■□□□□ 0
CLN3-239ENST00000628023 TRAM1Q15629 374 aa15.06■□□□□ 0
CLN3-239ENST00000628023 ARMCX4Q5H9R4 360 aa15.06■□□□□ 0
CLN3-239ENST00000628023 ASPHD2Q6ICH7 369 aa15.06■□□□□ 0
CLN3-239ENST00000628023 ZNF529Q6P280 563 aa15.06■□□□□ 0
CLN3-239ENST00000628023 FIP1L1Q6UN15 594 aaKnown RBP15.06■□□□□ 0
CLN3-239ENST00000628023 Q8IYB0 196 aa15.06■□□□□ 0
CLN3-239ENST00000628023 FAM216BQ8N7L0 139 aa15.06■□□□□ 0
CLN3-239ENST00000628023 OR52N4Q8NGI2 321 aa15.06■□□□□ 0
CLN3-239ENST00000628023 MTCH1Q9NZJ7 389 aa15.06■□□□□ 0
CLN3-239ENST00000628023 OR14J1Q9UGF5 321 aa15.06■□□□□ 0
CLN3-239ENST00000628023 TRAV8-7A0A075B6U6 113 aa15.05■□□□□ -0
CLN3-239ENST00000628023 A0A0G2JMP0 313 aa15.05■□□□□ -0
CLN3-239ENST00000628023 A0A0X1KG70 313 aa15.05■□□□□ -0
CLN3-239ENST00000628023 A8MXK9 166 aa15.05■□□□□ -0
CLN3-239ENST00000628023 ANGPTL7O43827 346 aa15.05■□□□□ -0
CLN3-239ENST00000628023 MAS1P04201 325 aa15.05■□□□□ -0
CLN3-239ENST00000628023 BCL3P20749 454 aa15.05■□□□□ -0
CLN3-239ENST00000628023 ZFP36P26651 326 aaKnown RBP15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms