RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 ZNF740Q8NDX6 193 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 CCDC54Q8NEL0 328 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 OR6Q1Q8NGQ2 317 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 OR2T11Q8NH01 316 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 ARPC1AQ92747 370 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 PPWD1Q96BP3 646 aaKnown RBP4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 UBE2E2Q96LR5 201 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 TMEM56Q96MV1 263 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 IP6K3Q96PC2 410 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 SH3GL3Q99963 347 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 WACQ9BTA9 647 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 TMEM208Q9BTX3 173 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 MRPS26Q9BYN8 205 aaKnown RBP4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 KRTAP9-8Q9BYQ0 159 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 SLC19A3Q9BZV2 496 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 DSN1Q9H410 356 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 UGT1A7Q9HAW7 530 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 UGT1A8Q9HAW9 530 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 GIN1Q9NXP7 522 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 GOLT1BQ9Y3E0 138 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 FBXO7Q9Y3I1 522 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF337Q9Y3M9 751 aa4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 LAMA2P24043 3122 aaKnown RBP4.23□□□□□ -1.73
VPS35P1-201ENST00000563400 ATG2BQ96BY7 2078 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 IGLV5-37A0A075B6J1 123 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 IGKV1D-8A0A087WSZ0 117 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 LINC01548A6NM66 108 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 F6UB75 175 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 CXCR6O00574 342 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 GABRPO00591 440 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 CDX4O14627 284 aaPredicted RBP4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 CDC40O60508 579 aaKnown RBP eCLIP4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 IGHV4-38-2P0DP08 117 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 FOLR1P15328 257 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 CBR1P16152 277 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 PSMD7P51665 324 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 GPM6AP51674 278 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 SUB1P53999 127 aaKnown RBP eCLIP4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 ERVPABLB-1P60509 514 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 SRSF6Q13247 344 aaKnown RBP4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 TRAM1Q15629 374 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF726P1Q15940 193 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 DEFB133Q30KQ1 61 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 YIF1BQ5BJH7 314 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 SPIN3Q5JUX0 258 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 OGFRL1Q5TC84 451 aaPredicted RBP4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 STEAP4Q687X5 459 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 FAM92BQ6ZTR7 304 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 MBOAT2Q6ZWT7 520 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 SMIM15Q7Z3B0 74 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 MRGPRGQ86SM5 289 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 CA13Q8N1Q1 262 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 SVOPLQ8N434 492 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 ZFP41Q8N8Y5 198 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 ACBD4Q8NC06 268 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 SMIM19Q96E16 107 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 MED8Q96G25 268 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 SEC22AQ96IW7 307 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 KCTD7Q96MP8 289 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 MCHR1Q99705 422 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 HOPXQ9BPY8 73 aaPredicted RBP4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 LRRC61Q9BV99 259 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 TM2D1Q9BX74 207 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 FAM96AQ9H5X1 160 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 CAB39LQ9H9S4 337 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 SIAEQ9HAT2 523 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 ELL3Q9HB65 397 aaPredicted RBP4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 FGF22Q9HCT0 170 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 SH2D2AQ9NP31 389 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 MLXQ9UH92 298 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 RARRES3Q9UL19 164 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 KLF12Q9Y4X4 402 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 SHROOM3Q8TF72 1996 aa4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 ARHGEF17Q96PE2 2063 aaPredicted RBP4.22□□□□□ -1.73
VPS35P1-201ENST00000563400 PLXND1Q9Y4D7 1925 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 TLCD2A6NGC4 264 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 MSGN1A6NI15 193 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 GJE1A6NN92 205 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 LYRM9A8MSI8 78 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF705EA8MWA4 302 aaPredicted RBP4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 LOC110117498-PIK3R3F6TDL0 507 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 COPEO14579 308 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF749O43361 778 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 NUDT14O95848 222 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 SLC35G6P0C7Q6 338 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 GFAPP14136 432 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF12P17014 697 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 SERPINB5P36952 375 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 PTH2RP49190 550 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 ERFP50548 548 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 AP2S1P53680 142 aaPredicted RBP4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 PSME3P61289 254 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 ST3GAL4Q11206 333 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 FOXF2Q12947 444 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 NUMA1Q14980 2115 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 TBC1D28Q2M2D7 210 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 NSUN5P1Q3KNT7 163 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 ZNF626Q68DY1 528 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 IGFL4Q6B9Z1 124 aa4.21□□□□□ -1.73
VPS35P1-201ENST00000563400 REP15Q6BDI9 236 aa4.21□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms