RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TAAR5O14804 337 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 PPP1R2P9O14990 202 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 OR2C1O95371 312 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 P04436 131 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 CELA3AP09093 270 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 OR8G3PP0DMU2 310 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 RAB4AP20338 218 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 CFPP27918 469 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 IL12BP29460 328 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 CEACAM6P40199 344 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 RAP1AP62834 184 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 OR8G1Q15617 311 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 RNASE10Q5GAN6 216 aaKnown RBP6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF684Q5T5D7 378 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 OR2A2Q6IF42 318 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 PRSS54Q6PEW0 395 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 CLEC18BQ6UXF7 455 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF584Q8IVC4 421 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF610Q8N9Z0 462 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 CLEC18CQ8NCF0 446 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 OR6X1Q8NH79 312 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ZNRF4Q8WWF5 429 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 TMEM106AQ96A25 262 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 RNF166Q96A37 237 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-216ENST00000552909 SUCNR1Q9BXA5 334 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 TTTY12Q9BZ98 90 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 COMMD4Q9H0A8 199 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 DEFB127Q9H1M4 99 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 KCNK15Q9H427 330 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 BCO1Q9HAY6 547 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 UBQLN4Q9NRR5 601 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 SLC2A8Q9NY64 477 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 CHRNA9Q9UGM1 479 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 ERRFI1Q9UJM3 462 aaPredicted RBP6.72□□□□□ -1.33
LIMA1-216ENST00000552909 KCNIP3Q9Y2W7 256 aa6.72□□□□□ -1.33
LIMA1-216ENST00000552909 TRBV5-7A0A0A0MS05 114 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 SERINC4A6NH21 518 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 C17orf51A8MQB3 221 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 PRR32B1ATL7 298 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF587BE7ETH6 402 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 H0YIZ8 118 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 SCDO00767 359 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 TSPAN15O95858 294 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 CSTAP01040 98 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 ERCC1P07992 297 aaPredicted RBP6.71□□□□□ -1.33
LIMA1-216ENST00000552909 PAX1P15863 534 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 AKR1C4P17516 323 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 RAB6AP20340 208 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 MAGEA5P43359 124 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 PCP4P48539 62 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 NHLH2Q02577 135 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 PLCXD2Q0VAA5 305 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 HYAL4Q2M3T9 481 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 HIST2H3PS2Q5TEC6 136 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 FNDC7Q5VTL7 733 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 TMPPEQ6ZT21 453 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 CD163Q86VB7 1156 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 COMMD1Q8N668 190 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 TMEM251Q8N6I4 163 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF676Q8N7Q3 588 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 GATSQ8NAP1 163 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 ZNF511Q8NB15 262 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 CD300LFQ8TDQ1 290 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 ST7LQ8TDW4 575 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 RAB24Q969Q5 203 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 FAM173AQ9BQD7 235 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 SLC5A7Q9GZV3 580 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 METTL9Q9H1A3 318 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 FRRS1LQ9P0K9 344 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 SH3BGRL2Q9UJC5 107 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 STARD10Q9Y365 291 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 TMED7Q9Y3B3 224 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 HDGFL3Q9Y3E1 203 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 IER3IP1Q9Y5U9 82 aa6.71□□□□□ -1.33
LIMA1-216ENST00000552909 TACC2O95359 2948 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 LRRC3CA6NJW4 275 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 RPL36A-HNRNPH2H7BZ11 118 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 SLC17A2O00624 439 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 TSPAN2O60636 221 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 UPK3AO75631 287 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 ADAP1O75689 374 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 GLCEO94923 617 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 NDUFB2O95178 105 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 MBP02144 154 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 HCKP08631 526 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 LYL1P12980 280 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 PTGDSP41222 190 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF84P51523 738 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 RPS23P62266 143 aaKnown RBP6.71□□□□□ -1.34
LIMA1-216ENST00000552909 NKX6-1P78426 367 aaPredicted RBP6.71□□□□□ -1.34
LIMA1-216ENST00000552909 PLGLB1Q02325 96 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 EIF2B1Q14232 305 aaKnown RBP6.71□□□□□ -1.34
LIMA1-216ENST00000552909 GUK1Q16774 197 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF674Q2M3X9 581 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 KHDC3LQ587J8 217 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 C1QL3Q5VWW1 255 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 RPL7L1Q6DKI1 246 aaKnown RBP6.71□□□□□ -1.34
LIMA1-216ENST00000552909 ZNF529Q6P280 563 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 HIST3H2BBQ8N257 126 aa6.71□□□□□ -1.34
LIMA1-216ENST00000552909 LYPD6BQ8NI32 183 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms