RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 LIPFP07098 398 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 GBX2P52951 348 aaPredicted RBP12.71□□□□□ -0.37
VAPA-201ENST00000340541 IL13RA1P78552 427 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 IKZF1Q13422 519 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 ZNF676Q8N7Q3 588 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 ZNF485Q8NCK3 441 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 DNAAF1Q8NEP3 725 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 C22orf15Q8WYQ4 148 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 RGP1Q92546 391 aaPredicted RBP12.71□□□□□ -0.37
VAPA-201ENST00000340541 SDSLQ96GA7 329 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 TBX15Q96SF7 602 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 SLC6A7Q99884 636 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 SIRPDQ9H106 197 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 VCXQ9H320 206 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 MTCH1Q9NZJ7 389 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 POLDIP2Q9Y2S7 368 aa12.71□□□□□ -0.37
VAPA-201ENST00000340541 SIRT4Q9Y6E7 314 aaPredicted RBP12.71□□□□□ -0.37
VAPA-201ENST00000340541 NKX6-3A6NJ46 265 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 F8VVB4 439 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 F8VWA3 439 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 H0YJX3 145 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 XPNPEP2O43895 674 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 RGS9O75916 674 aaPredicted RBP12.7□□□□□ -0.38
VAPA-201ENST00000340541 SERPINA3P01011 423 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 SFTPBP07988 381 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 CCDC159P0C7I6 412 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 PIPP12273 146 aaPredicted RBP12.7□□□□□ -0.38
VAPA-201ENST00000340541 ATF1P18846 271 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 AQP4P55087 323 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 CNN3Q15417 329 aaKnown RBP12.7□□□□□ -0.38
VAPA-201ENST00000340541 SMIM21Q3B7S5 101 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 CRIP3Q6Q6R5 217 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 RNF144BQ7Z419 303 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 BCL6BQ8N143 479 aaPredicted RBP12.7□□□□□ -0.38
VAPA-201ENST00000340541 BATF2Q8N1L9 274 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 CD177Q8N6Q3 437 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 PNLDC1Q8NA58 520 aaKnown RBP12.7□□□□□ -0.38
VAPA-201ENST00000340541 ZNRF1Q8ND25 227 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 OR13C3Q8NGS6 347 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 OR5AK2Q8NH90 309 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 HAVCR2Q8TDQ0 301 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 BORCS8Q96FH0 119 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 TMEM80Q96HE8 168 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 MED30Q96HR3 178 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 DCTN5Q9BTE1 182 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 PLCXD1Q9NUJ7 323 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 PSORS1C1Q9UIG5 152 aa12.7□□□□□ -0.38
VAPA-201ENST00000340541 EXOSC1Q9Y3B2 195 aaKnown RBP12.7□□□□□ -0.38
VAPA-201ENST00000340541 IGHV3OR16-10A0A075B7F0 116 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 TRAV40A0A0B4J280 105 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 TRBV2A0A0J9YWF9 115 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 RFPL4AA6NLU0 287 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 RFPL4AL1F8VTS6 287 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 GPR37O15354 613 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 ZNF20P17024 532 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 AZGP1P25311 298 aaKnown RBP12.69□□□□□ -0.38
VAPA-201ENST00000340541 GABRA2P47869 451 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 CAV3P56539 151 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 ST3GAL4Q11206 333 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 CDK5R1Q15078 307 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 CCDC58Q4VC31 144 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 LRRC10Q5BKY1 277 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 ASPHD2Q6ICH7 369 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 RPL22L1Q6P5R6 122 aaKnown RBP12.69□□□□□ -0.38
VAPA-201ENST00000340541 C9orf139Q6ZV77 190 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 SLC25A26Q70HW3 274 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 PARP16Q8N5Y8 322 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 ZDHHC22Q8N966 263 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 C8orf46Q8TAG6 207 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 SPSB1Q96BD6 273 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 WDFY2Q96P53 400 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 ZMAT3Q9HA38 289 aaKnown RBP12.69□□□□□ -0.38
VAPA-201ENST00000340541 FKBP14Q9NWM8 211 aa12.69□□□□□ -0.38
VAPA-201ENST00000340541 CNOT2Q9NZN8 540 aaKnown RBP12.69□□□□□ -0.38
VAPA-201ENST00000340541 SLC25A10Q9UBX3 287 aaPredicted RBP12.69□□□□□ -0.38
VAPA-201ENST00000340541 SOX21Q9Y651 276 aaPredicted RBP12.69□□□□□ -0.38
VAPA-201ENST00000340541 EFCAB10A6NFE3 127 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 OGG1O15527 345 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 NXPH2O95156 264 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 MT-ND2P03891 347 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 MYL12AP19105 171 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 PRKACBP22694 351 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 CEBPDP49716 269 aaPredicted RBP12.68□□□□□ -0.38
VAPA-201ENST00000340541 RBP2P50120 134 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 ARF6P62330 175 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 UBA52P62987 128 aaKnown RBP12.68□□□□□ -0.38
VAPA-201ENST00000340541 FOXL1Q12952 345 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 DOC2BQ14184 412 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 RBMS3Q6XE24 437 aaKnown RBP12.68□□□□□ -0.38
VAPA-201ENST00000340541 TMPRSS11AQ6ZMR5 421 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 OR13C9Q8NGT0 318 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 OR52N1Q8NH53 320 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 SLAMF9Q96A28 289 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 CEP19Q96LK0 163 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 DMRTB1Q96MA1 342 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 ZNF48Q96MX3 618 aaPredicted RBP12.68□□□□□ -0.38
VAPA-201ENST00000340541 PCGF1Q9BSM1 259 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 COMMD4Q9H0A8 199 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 CNTD2Q9H8S5 307 aa12.68□□□□□ -0.38
VAPA-201ENST00000340541 ELL3Q9HB65 397 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms