RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 NDUFA2O43678 99 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 GATBO75879 557 aaKnown RBP12.65□□□□□ -0.38
LIG1-219ENST00000600055 SERPINA3P01011 423 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 CCDC159P0C7I6 412 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 ADRA2CP18825 462 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 MYF6P23409 242 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 GLRA1P23415 457 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 SRP14P37108 136 aaKnown RBP12.65□□□□□ -0.38
LIG1-219ENST00000600055 DOC2BQ14184 412 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 STUMQ69YW2 141 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 RPL22L1Q6P5R6 122 aaKnown RBP12.65□□□□□ -0.38
LIG1-219ENST00000600055 STX19Q8N4C7 294 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 FAM216BQ8N7L0 139 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 ZNF485Q8NCK3 441 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 OR52N1Q8NH53 320 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 PP6455Q8WZ26 134 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 RGP1Q92546 391 aaPredicted RBP12.65□□□□□ -0.38
LIG1-219ENST00000600055 SGCDQ92629 289 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 COMMD4Q9H0A8 199 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 C7orf69Q9H7B7 122 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 CHCHD3Q9NX63 227 aaKnown RBP12.65□□□□□ -0.38
LIG1-219ENST00000600055 BABAM2Q9NXR7 383 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 OPN4Q9UHM6 478 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 INSIG2Q9Y5U4 225 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 C2CD3Q4AC94 2353 aa12.65□□□□□ -0.38
LIG1-219ENST00000600055 C22orf46C9J442 243 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 PTGES3LE9PB15 166 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 J3QLI3 93 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 SLC1A7O00341 560 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 DVL1O14640 695 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 TMPRSS2O15393 492 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 INMTO95050 263 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 PLATP00750 562 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 SELLP14151 372 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 ATF1P18846 271 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 GATA3P23771 443 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 FUT6P51993 359 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 MED21Q13503 144 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 CDK5R1Q15078 307 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 CCDC58Q4VC31 144 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 RNF144BQ7Z419 303 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 ZFP41Q8N8Y5 198 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 POC1AQ8NBT0 407 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 ANGPTL6Q8NI99 470 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 RPS4Y2Q8TD47 263 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 HAVCR2Q8TDQ0 301 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 DACT3Q96B18 629 aaPredicted RBP12.64□□□□□ -0.39
LIG1-219ENST00000600055 TMIGD2Q96BF3 282 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 C12orf43Q96C57 262 aaKnown RBP12.64□□□□□ -0.39
LIG1-219ENST00000600055 ANKRD60Q9BZ19 345 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 NLKQ9UBE8 527 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 KAAG1Q9UBP8 84 aa12.64□□□□□ -0.39
LIG1-219ENST00000600055 IGHV2-70DA0A0C4DH43 119 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 OR2AT4A6NND4 320 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 OGG1O15527 345 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 PGA5P0DJD9 388 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 MPZP25189 248 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 AZGP1P25311 298 aaKnown RBP12.63□□□□□ -0.39
LIG1-219ENST00000600055 SOX2P48431 317 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 NPY4RP50391 375 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 IKZF1Q13422 519 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 CNN3Q15417 329 aaKnown RBP12.63□□□□□ -0.39
LIG1-219ENST00000600055 ACP7Q6ZNF0 438 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 UTS2BQ765I0 119 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 OR13C9Q8NGT0 318 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 TSEN15Q8WW01 171 aaKnown RBP12.63□□□□□ -0.39
LIG1-219ENST00000600055 RAB40AQ8WXH6 277 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 BORCS8Q96FH0 119 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 GAFA1Q96PS6 74 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 ZNF184Q99676 751 aaPredicted RBP12.63□□□□□ -0.39
LIG1-219ENST00000600055 NUDT16L1Q9BRJ7 211 aaKnown RBP12.63□□□□□ -0.39
LIG1-219ENST00000600055 PKIBQ9C010 78 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 PAK1IP1Q9NWT1 392 aaPredicted RBP12.63□□□□□ -0.39
LIG1-219ENST00000600055 RAB26Q9ULW5 256 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 DHDHQ9UQ10 334 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 PCDHGB5Q9Y5G0 923 aa12.63□□□□□ -0.39
LIG1-219ENST00000600055 IGKV1D-17A0A075B6S4 117 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 F8VVB4 439 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 F8VWA3 439 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 NOS1APO75052 506 aaPredicted RBP12.62□□□□□ -0.39
LIG1-219ENST00000600055 CDK1P06493 297 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 PSG2P11465 335 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 GABRA2P47869 451 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 PAX8Q06710 450 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 IL24Q13007 206 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 ATPAF1Q5TC12 328 aaPredicted RBP12.62□□□□□ -0.39
LIG1-219ENST00000600055 SLC36A1Q7Z2H8 476 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 OR13C5Q8NGS8 318 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 ST8SIA4Q92187 359 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 SLAMF9Q96A28 289 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 RFT1Q96AA3 541 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 SPACA5Q96QH8 159 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 NRIP2Q9BQI9 281 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 ZCCHC4Q9H5U6 513 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 MTCH1Q9NZJ7 389 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 POLDIP2Q9Y2S7 368 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 AUP1Q9Y679 476 aa12.62□□□□□ -0.39
LIG1-219ENST00000600055 CUBNO60494 3623 aa12.61□□□□□ -0.39
LIG1-219ENST00000600055 KIR2DS1A0A191URI9 304 aa12.61□□□□□ -0.39
LIG1-219ENST00000600055 PNMA8CA0A1B0GUJ8 204 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms