RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PLEKHJ1Q9NW61 149 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 C1orf123Q9NWV4 160 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 LRFN1Q9P244 771 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 MBD2Q9UBB5 411 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ANXA10Q9UJ72 324 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 MCTS1Q9ULC4 181 aaKnown RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 KLF13Q9Y2Y9 288 aaPredicted RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 NOSIPQ9Y314 301 aaKnown RBP5.44□□□□□ -1.54
CLN3-223ENST00000566472 UNC13CQ8NB66 2214 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 ASXL3Q9C0F0 2248 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 FREM3P0C091 2139 aa5.44□□□□□ -1.54
CLN3-223ENST00000566472 PCNX3Q9H6A9 2034 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 C13orf42A0A1B0GVH6 325 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 PINLYPA6NC86 204 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 CRYM-AS1A6NIL9 109 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 FAM25EA8MYX2 175 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 ZNF587BE7ETH6 402 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 F5H0A9 414 aaPredicted RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 M0R296 226 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 TAAR5O14804 337 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 BET1O15155 118 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 PDCD6O75340 191 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 MRPL33O75394 65 aaKnown RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 NEURL1O76050 574 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 HTR3BO95264 441 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 MT-CO3P00414 261 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 IFNA2P01563 188 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 CD59P13987 128 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 GABRR1P24046 479 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 NTF4P34130 210 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 RBMXP38159 391 aaKnown RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 LUMP51884 338 aaPredicted RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 UCP3P55916 312 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 CLDN18P56856 261 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 SUPT4H1P63272 117 aaKnown RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 FAM3AP98173 230 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 AIMP2Q13155 320 aaKnown RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 IL15RAQ13261 267 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 SNTB1Q13884 538 aaKnown RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 RNPS1Q15287 305 aaKnown RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 SLC9A3R2Q15599 337 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 SRSF7Q16629 238 aaKnown RBP eCLIP5.43□□□□□ -1.54
CLN3-223ENST00000566472 ANKRD55Q3KP44 614 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 PAN3Q58A45 887 aaKnown RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 DCAF10Q5QP82 559 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 RPUSD3Q6P087 351 aaKnown RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 Q6ZS49 121 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 DTX1Q86Y01 620 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 SGPP2Q8IWX5 399 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 SKA3Q8IX90 412 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 OSR2Q8N2R0 312 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 AKR7LQ8NHP1 331 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 PCNPQ8WW12 178 aaKnown RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 DCUN1D4Q92564 292 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 PIK3IP1Q96FE7 263 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 SEC22AQ96IW7 307 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 FER1L6-AS2Q96M78 137 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 CMSS1Q9BQ75 279 aaKnown RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 ARRDC1-AS1Q9H2J1 176 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 PIGMQ9H3S5 423 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 NARFLQ9H6Q4 476 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 ZNF286AQ9HBT8 521 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 ZFP57Q9NU63 452 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 ZNF701Q9NV72 531 aaPredicted RBP5.43□□□□□ -1.54
CLN3-223ENST00000566472 NECAP2Q9NVZ3 263 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 CSAG2Q9Y5P2 127 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 CEP290O15078 2479 aa5.43□□□□□ -1.54
CLN3-223ENST00000566472 IGKV1-27A0A075B6S5 117 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 FAM230AA0A1W2PPH8 454 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 LNP1A1A4G5 178 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 RAB19A4D1S5 217 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 ZSCAN5BA6NJL1 495 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 TEX46H3BTG2 121 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 J3QW42 95 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 MASP2O00187 686 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 FGF16O43320 207 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 NME2P1O60361 137 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 SS18L1O75177 396 aaPredicted RBP5.42□□□□□ -1.54
CLN3-223ENST00000566472 ACTL6AO96019 429 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 CST4P01036 141 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 IFNA21P01568 189 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 FCGR3AP08637 254 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 OR5H8P0DN80 308 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 EDN3P14138 238 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 NME2P22392 152 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 PTGER4P35408 488 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 ARR3P36575 388 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 RBM11P57052 281 aaKnown RBP5.42□□□□□ -1.54
CLN3-223ENST00000566472 PPIAP62937 165 aaKnown RBP5.42□□□□□ -1.54
CLN3-223ENST00000566472 ARF1P84077 181 aaKnown RBP5.42□□□□□ -1.54
CLN3-223ENST00000566472 ZNF92Q03936 586 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 MALLQ13021 153 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 PDZK1IP1Q13113 114 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 OR1C1Q15619 314 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 LRRC37A5PQ49AS3 106 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 PABPC1L2AQ5JQF8 200 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 NKAPLQ5M9Q1 402 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 TSPO2Q5TGU0 170 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 PLCXD3Q63HM9 321 aa5.42□□□□□ -1.54
CLN3-223ENST00000566472 ELP2Q6IA86 826 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms