RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 APH1BQ8WW43 257 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 BORCS8Q96FH0 119 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 JAM3Q9BX67 310 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 PKIBQ9C010 78 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 MS4A7Q9GZW8 240 aaPredicted RBP11.11□□□□□ -0.63
CLK3-213ENST00000563842 COMMD4Q9H0A8 199 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 WDR13Q9H1Z4 485 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 RASSF4Q9H2L5 321 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 SMURF1Q9HCE7 757 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 FGF20Q9NP95 211 aaPredicted RBP11.11□□□□□ -0.63
CLK3-213ENST00000563842 SNTG1Q9NSN8 517 aa11.11□□□□□ -0.63
CLK3-213ENST00000563842 FBN1P35555 2871 aaKnown RBP11.1□□□□□ -0.63
CLK3-213ENST00000563842 FAM230AA0A1W2PPH8 454 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 TMEM212A6NML5 194 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 ANKRD65E5RJM6 399 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 H3BSH0 61 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 TRIM77I1YAP6 450 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 SIGLEC5O15389 551 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 WBP4O75554 376 aaKnown RBP11.1□□□□□ -0.63
CLK3-213ENST00000563842 TOX4O94842 621 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 OCM2P0CE71 109 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 OCMP0CE72 109 aaPredicted RBP11.1□□□□□ -0.63
CLK3-213ENST00000563842 PGA5P0DJD9 388 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 PRKACBP22694 351 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 MPZP25189 248 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 CAPGP40121 348 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 GABRA2P47869 451 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 ATP1B3P54709 279 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 HILS1P60008 231 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 FGF12P61328 243 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 ADARB1P78563 741 aaKnown RBP11.1□□□□□ -0.63
CLK3-213ENST00000563842 IL24Q13007 206 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 IKZF1Q13422 519 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 UBE2V2Q15819 145 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 TMPRSS11AQ6ZMR5 421 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 ACP7Q6ZNF0 438 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 UTS2BQ765I0 119 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 RDH10Q8IZV5 341 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 C8orf59Q8N0T1 100 aaPredicted RBP11.1□□□□□ -0.63
CLK3-213ENST00000563842 FAM216BQ8N7L0 139 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 DNAAF1Q8NEP3 725 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 SEH1LQ96EE3 360 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 CNTD2Q9H8S5 307 aa11.1□□□□□ -0.63
CLK3-213ENST00000563842 CHCHD3Q9NX63 227 aaKnown RBP11.1□□□□□ -0.63
CLK3-213ENST00000563842 RPUSD1Q9UJJ7 312 aaKnown RBP11.1□□□□□ -0.63
CLK3-213ENST00000563842 OR4C45A6NMZ5 311 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 SYNGR1O43759 233 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 NXPH2O95156 264 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 CLIC3O95833 236 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 CYB5AP00167 134 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 PSG2P11465 335 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 MYL12AP19105 171 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 RBP2P50120 134 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 CAV3P56539 151 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 NANOS3P60323 173 aaKnown RBP11.09□□□□□ -0.63
CLK3-213ENST00000563842 PDCD1Q15116 288 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 SMN1Q16637 294 aaKnown RBP11.09□□□□□ -0.63
CLK3-213ENST00000563842 KRTAP24-1Q3LI83 254 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 KLF17Q5JT82 389 aaPredicted RBP11.09□□□□□ -0.63
CLK3-213ENST00000563842 GPR157Q5UAW9 335 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 PHC2Q8IXK0 858 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 CMTM4Q8IZR5 234 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 OR13C3Q8NGS6 347 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 CNIH3Q8TBE1 160 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 TRMT10AQ8TBZ6 339 aaKnown RBP11.09□□□□□ -0.63
CLK3-213ENST00000563842 RNF166Q96A37 237 aaPredicted RBP11.09□□□□□ -0.63
CLK3-213ENST00000563842 FGGYQ96C11 551 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 WDFY2Q96P53 400 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 GAFA1Q96PS6 74 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 SLC6A7Q99884 636 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 PCGF1Q9BSM1 259 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 ISG20L2Q9H9L3 353 aaKnown RBP11.09□□□□□ -0.63
CLK3-213ENST00000563842 SLC25A10Q9UBX3 287 aaPredicted RBP11.09□□□□□ -0.63
CLK3-213ENST00000563842 CAB39Q9Y376 341 aaPredicted RBP11.09□□□□□ -0.63
CLK3-213ENST00000563842 EXOSC1Q9Y3B2 195 aaKnown RBP11.09□□□□□ -0.63
CLK3-213ENST00000563842 KPTNQ9Y664 436 aa11.09□□□□□ -0.63
CLK3-213ENST00000563842 DSCAML1Q8TD84 2053 aa11.08□□□□□ -0.63
CLK3-213ENST00000563842 TRAV40A0A0B4J280 105 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 SLC1A7O00341 560 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 VENTXO95231 258 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 PLATP00750 562 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 NDUFB7P17568 137 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 ATF1P18846 271 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 AMY2BP19961 511 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 ELF3P78545 371 aaPredicted RBP11.08□□□□□ -0.64
CLK3-213ENST00000563842 SLC34A1Q06495 639 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 CCDC58Q4VC31 144 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 LHFPL2Q6ZUX7 228 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 C9orf139Q6ZV77 190 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 MKXQ8IYA7 352 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 Q8IYB0 196 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 ZNF561Q8N587 486 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 OR5AK2Q8NH90 309 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 NPRL2Q8WTW4 380 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 C22orf15Q8WYQ4 148 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 H1FXQ92522 213 aaKnown RBP11.08□□□□□ -0.64
CLK3-213ENST00000563842 SPSB1Q96BD6 273 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 SDSLQ96GA7 329 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 NRIP2Q9BQI9 281 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 ZNF649Q9BS31 505 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms