RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ESRP2Q9H6T0 727 aaKnown RBP4.43□□□□□ -1.7
LDLR-209ENST00000558528 RNF121Q9H920 327 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ELOVL3Q9HB03 270 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 CDH20Q9HBT6 801 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 CRLF2Q9HC73 371 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 TMEM38BQ9NVV0 291 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 MRPL22Q9NWU5 206 aaKnown RBP4.43□□□□□ -1.7
LDLR-209ENST00000558528 SPRR3Q9UBC9 169 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 ZNF391Q9UJN7 358 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 PROCRQ9UNN8 238 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 LAMP3Q9UQV4 416 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 FOXA2Q9Y261 457 aaPredicted RBP4.43□□□□□ -1.7
LDLR-209ENST00000558528 MRPS7Q9Y2R9 242 aaKnown RBP4.43□□□□□ -1.7
LDLR-209ENST00000558528 CSAG2Q9Y5P2 127 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 R4GMQ9 66 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 SDK2Q58EX2 2172 aa4.43□□□□□ -1.7
LDLR-209ENST00000558528 PNMA8CA0A1B0GUJ8 204 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 TMEM269A0A1B0GVZ9 245 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 OR6C6A6NF89 314 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 LOC110117498-PIK3R3F6TDL0 507 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 H0YC42 278 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 H3BMQ9 156 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 DCTN6O00399 190 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 SPINT2O43291 252 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 RAMP1O60894 148 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 UPK3AO75631 287 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ISG15P05161 165 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 CSN3P07498 182 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 UBCP0CG48 685 aaKnown RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 TUBG1P23258 451 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ZFP36P26651 326 aaKnown RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 AGTR1P30556 359 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 S100A5P33763 92 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 CRYBB2P43320 205 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 OR3A2P47893 321 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 CDX1P47902 265 aaPredicted RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 GDI2P50395 445 aaKnown RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 GALK2Q01415 458 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 PMP22Q01453 160 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 SLC3A1Q07837 685 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 DYNC1I2Q13409 638 aaKnown RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 P2RY6Q15077 328 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 CTF1Q16619 201 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 CEACAM16Q2WEN9 425 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ACSF3Q4G176 576 aaPredicted RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 TP53I3Q53FA7 332 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ELFN2Q5R3F8 820 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 C1orf185Q5T7R7 199 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ZNF324BQ6AW86 544 aaPredicted RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 DRAM2Q6UX65 266 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 GFRALQ6UXV0 394 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ZNF813Q6ZN06 617 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 LUZP2Q86TE4 346 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 C17orf78Q8N4C9 275 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 SLC22A24Q8N4F4 322 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ZNF676Q8N7Q3 588 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 TEX45Q8NA69 505 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 OR52H1Q8NGJ2 320 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 RNASE8Q8TDE3 154 aaKnown RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 GPR148Q8TDV2 347 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ZNRF4Q8WWF5 429 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 S100ZQ8WXG8 99 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ACOT12Q8WYK0 555 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 PCSK5Q92824 1860 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 GHSRQ92847 366 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 C10orf35Q96D05 121 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 SLAMF6Q96DU3 332 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ATF6BQ99941 703 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 SFXN3Q9BWM7 321 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 DCSTAMPQ9H295 470 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 RGCCQ9H4X1 137 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 ISG20L2Q9H9L3 353 aaKnown RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 ZNF71Q9NQZ8 489 aaPredicted RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 TUBG2Q9NRH3 451 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 PLEK2Q9NYT0 353 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 TAS2R16Q9NYV7 291 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 RCC2Q9P258 522 aaKnown RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 CLCF1Q9UBD9 225 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 CKLFQ9UBR5 152 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 MALT1Q9UDY8 824 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 MRM2Q9UI43 246 aaKnown RBP4.42□□□□□ -1.7
LDLR-209ENST00000558528 OR52A1Q9UKL2 312 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 HHLA2Q9UM44 414 aa4.42□□□□□ -1.7
LDLR-209ENST00000558528 IGKV1D-43A0A0B4J1Z2 117 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 TRAV1-2A0A0B4J238 106 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 LOC100506127A0A0U1RQW1 187 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 IQCMA0A1B0GVH7 501 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 A0A1B0GVI7 797 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 CIB4A0PJX0 185 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 FAM90A10PA6NDY2 464 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 ANKRD61A6NGH8 418 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 GABRPO00591 440 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 DVL1O14640 695 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 CASKO14936 926 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 XRCC3O43542 346 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 SGCEO43556 437 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 SCGB2A1O75556 95 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 RPP14O95059 124 aaKnown RBP4.41□□□□□ -1.7
LDLR-209ENST00000558528 MPZL1O95297 269 aa4.41□□□□□ -1.7
LDLR-209ENST00000558528 TGM6O95932 706 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms