RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 COPS4Q9BT78 406 aa10.35□□□□□ -0.75
USP28-212ENST00000544750 CDCA4Q9BXL8 241 aa10.35□□□□□ -0.75
USP28-212ENST00000544750 OR51V1Q9H2C8 321 aa10.35□□□□□ -0.75
USP28-212ENST00000544750 TVP23BQ9NYZ1 205 aa10.35□□□□□ -0.75
USP28-212ENST00000544750 ZNF319Q9P2F9 582 aa10.35□□□□□ -0.75
USP28-212ENST00000544750 TCF19Q9Y242 345 aa10.35□□□□□ -0.75
USP28-212ENST00000544750 RHBDD3Q9Y3P4 386 aa10.35□□□□□ -0.75
USP28-212ENST00000544750 EPPK1P58107 5090 aaKnown RBP10.35□□□□□ -0.75
USP28-212ENST00000544750 BIRC6Q9NR09 4857 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 IGKV1D-17A0A075B6S4 117 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 TRBV23-1A0A0A0MS06 115 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 A6NDX4 124 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 SAC3D1A6NKF1 404 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 H0YAE9 185 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 AKR7A2O43488 359 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 SELENOFO60613 162 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 FAHP16930 419 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 GSK3AP49840 483 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 GMFBP60983 142 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 EGFEM1PQ0D2K5 195 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 EIF2B1Q14232 305 aaKnown RBP10.34□□□□□ -0.75
USP28-212ENST00000544750 CNN3Q15417 329 aaKnown RBP10.34□□□□□ -0.75
USP28-212ENST00000544750 SLX4IPQ5VYV7 408 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 ZNRF1Q8ND25 227 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 RPL3LQ92901 407 aaKnown RBP10.34□□□□□ -0.75
USP28-212ENST00000544750 REEP6Q96HR9 211 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 B9D2Q9BPU9 175 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 ABHD6Q9BV23 337 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 OSBPL10Q9BXB5 764 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 NLKQ9UBE8 527 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 KLHDC2Q9Y2U9 406 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 N6AMT1Q9Y5N5 214 aa10.34□□□□□ -0.75
USP28-212ENST00000544750 TMEM210A6NLX4 147 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 OR2AT4A6NND4 320 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 ZNF878C9JN71 531 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 TBX1O43435 398 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 PSG2P11465 335 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 POLR2IP36954 125 aaKnown RBP10.33□□□□□ -0.76
USP28-212ENST00000544750 SNAPC1Q16533 368 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 TIGD6Q17RP2 521 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 DEFB121Q5J5C9 76 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 SLC35D3Q5M8T2 416 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 ZFP1Q6P2D0 407 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 BCDIN3DQ7Z5W3 292 aaKnown RBP10.33□□□□□ -0.76
USP28-212ENST00000544750 LHFPL4Q7Z7J7 247 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 CSNK2A3Q8NEV1 391 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 RNF133Q8WVZ7 376 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 HPSE2Q8WWQ2 592 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 OR5P3Q8WZ94 311 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 MICU1Q9BPX6 476 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 OCSTAMPQ9BR26 566 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 PAPOLGQ9BWT3 736 aaKnown RBP10.33□□□□□ -0.76
USP28-212ENST00000544750 GABARAPL3Q9BY60 117 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 HEXA-AS1Q9H8Q6 139 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 C19orf12Q9NSK7 152 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 CENPMQ9NSP4 180 aa10.33□□□□□ -0.76
USP28-212ENST00000544750 E9PQ18 207 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 ALPLP05186 524 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 ACKR3P25106 362 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 OPRL1P41146 370 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 CX3CR1P49238 355 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 RAB13P51153 203 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 ERVFRD-1P60508 538 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 BLCAPP62952 87 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 IL5RAQ01344 420 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 APOFQ13790 326 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 TMEM95Q3KNT9 176 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 TCTEX1D4Q5JR98 221 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 LDLRAD2Q5SZI1 272 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 SHFQ7M4L6 423 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 FAM185AQ8N0U4 392 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 OTOSQ8NHW6 89 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 SDSLQ96GA7 329 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 RCC1LQ96I51 464 aaKnown RBP10.32□□□□□ -0.76
USP28-212ENST00000544750 OR5M11Q96RB7 305 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 RTL8AQ9BWD3 113 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 PRSS22Q9GZN4 317 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 SP140LQ9H930 580 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 LRP12Q9Y561 859 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 MPC1Q9Y5U8 109 aa10.32□□□□□ -0.76
USP28-212ENST00000544750 ANXA2P2A6NMY6 339 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 PRR32B1ATL7 298 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 RHBDL1O75783 438 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 CST4P01036 141 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 GLRA1P23415 457 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 CFL1P23528 166 aaKnown RBP10.31□□□□□ -0.76
USP28-212ENST00000544750 GNALP38405 381 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 GABRA2P47869 451 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 GRB2P62993 217 aaKnown RBP10.31□□□□□ -0.76
USP28-212ENST00000544750 SLC35A2P78381 396 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 COL10A1Q03692 680 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 CD69Q07108 199 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 PRDX4Q13162 271 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 TAF13Q15543 124 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 AADACL4Q5VUY2 407 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 KRT74Q7RTS7 529 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 TMEM219Q86XT9 240 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 TCEANCQ8N8B7 351 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 TMEM185AQ8NFB2 350 aa10.31□□□□□ -0.76
USP28-212ENST00000544750 TMEM163Q8TC26 289 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms