RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ADAT3Q96EY9 351 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 KCNK17Q96T54 332 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 ATPIF1Q9UII2 106 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 PURGQ9UJV8 347 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 RNF150Q9ULK6 438 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 PPP1R3CQ9UQK1 317 aa9.52□□□□□ -0.89
LIMCH1-205ENST00000503057 A0A1W2PR77 199 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 NPIPB9F8W1W9 429 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 SOCS1O15524 211 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 PDCD6O75340 191 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 PDZK1IP1Q13113 114 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 KCNIP4Q6PIL6 250 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 BRICD5Q6PL45 260 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 VHLLQ6RSH7 139 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 LINC00114Q6XXX2 140 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 H2BFWTQ7Z2G1 175 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 FBXW5Q969U6 566 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 DUSP13Q9UII6 198 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 TCFL5Q9UL49 500 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 SCGB2A1O75556 95 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 IGKV3-11P04433 115 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 CTSDP07339 412 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 CCL3P10147 92 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 IL11P20809 199 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 GNG3P63215 75 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 C19orf57Q0VDD7 668 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 SIGIRRQ6IA17 410 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 FDX2Q6P4F2 183 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 OR11G2Q8NGC1 345 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 FLVCR1-AS1Q8TAF5 88 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 NAA60Q9H7X0 242 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 KCNIP2Q9NS61 270 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 OR13C7P0DN81 318 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 COMMD1Q8N668 190 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF610Q8N9Z0 462 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 AMELYQ99218 206 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF426Q9BUY5 554 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 EDEM2Q9BV94 578 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 TMEM231Q9H6L2 316 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 NGBQ9NPG2 151 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 CA10Q9NS85 328 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 KLK13Q9UKR3 277 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 ARID1BQ8NFD5 2236 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 STARD6P59095 220 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 RPS23P62266 143 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 RBPJQ06330 500 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 PRDX4Q13162 271 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 USF2Q15853 346 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 RHOFQ9HBH0 211 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 PROCRQ9UNN8 238 aa9.51□□□□□ -0.89
LIMCH1-205ENST00000503057 FAM157BP0CG42 384 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 TAGLN2P37802 199 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 RAB32Q13637 225 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 OR2I1PQ8NGU4 316 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 NTNG2Q96CW9 530 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 TRGV5A0A0B4J1U4 118 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 UMAD1C9J7I0 102 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 IFNA10P01566 189 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 MEOX1P50221 254 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 MLF1P58340 268 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 IFITM2Q01629 132 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 EGR4Q05215 589 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 MOB1BQ7L9L4 216 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 SLC25A45Q8N413 288 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 C14orf79Q96F83 325 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 CHST5Q9GZS9 411 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 SHISA3A0PJX4 238 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 MT-CO3P00414 261 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 CCL4P13236 92 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 INPP5JQ15735 1006 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 OR4D10Q8NGI6 311 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 MRPL22Q9NWU5 206 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 NKX6-3A6NJ46 265 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 CRHP06850 196 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 PGA4P0DJD7 388 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 PGA3P0DJD8 388 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 CD37P11049 281 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 PSMB3P49720 205 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 ZNF345Q14585 488 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 CLEC18BQ6UXF7 455 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 MITD1Q8WV92 249 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 GPR87Q9BY21 358 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 NARFLQ9H6Q4 476 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 TMEM100Q9NV29 134 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 PCDHB10Q9UN67 800 aa9.5□□□□□ -0.89
LIMCH1-205ENST00000503057 SCAF4O95104 1147 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 OR8U8P0C7N1 319 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 EDDM3BP56851 147 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 EDDM3AQ14507 147 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 PMS2CLQ68D20 193 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 BPIFCQ8NFQ6 507 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 NANPQ8TBE9 248 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 DNASE2BQ8WZ79 361 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 CLDN23Q96B33 292 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 PLA2G3Q9NZ20 509 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 ANXA10Q9UJ72 324 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 MS4A18H0YCH9 400 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 ADRA2AP08913 450 aa9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 MDH2P40926 338 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-205ENST00000503057 OR8B8Q15620 311 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms