RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 RRASP10301 218 aa12.9□□□□□ -0.34
HDAC6-220ENST00000477528 EDN3P14138 238 aa12.9□□□□□ -0.34
HDAC6-220ENST00000477528 C20orf196Q8IYI0 205 aa12.9□□□□□ -0.34
HDAC6-220ENST00000477528 PIK3IP1Q96FE7 263 aa12.9□□□□□ -0.34
HDAC6-220ENST00000477528 ZNF385AQ96PM9 386 aaKnown RBP12.9□□□□□ -0.34
HDAC6-220ENST00000477528 TRIB1Q96RU8 372 aa12.9□□□□□ -0.34
HDAC6-220ENST00000477528 CHST5Q9GZS9 411 aa12.9□□□□□ -0.34
HDAC6-220ENST00000477528 KLK13Q9UKR3 277 aa12.9□□□□□ -0.34
HDAC6-220ENST00000477528 A0A1W2PQM1 296 aa12.9□□□□□ -0.35
HDAC6-220ENST00000477528 SIRPB1O00241 398 aa12.9□□□□□ -0.35
HDAC6-220ENST00000477528 DHRS13Q6UX07 377 aa12.9□□□□□ -0.35
HDAC6-220ENST00000477528 PRRX2Q99811 253 aa12.9□□□□□ -0.35
HDAC6-220ENST00000477528 RYDENQ9NUL5 291 aaKnown RBP12.9□□□□□ -0.35
HDAC6-220ENST00000477528 COL4A6Q14031 1691 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 TRGV5A0A0B4J1U4 118 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 PMS2P1A4D2B8 440 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 SPINT2O43291 252 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 PRSS54Q6PEW0 395 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 GPR87Q9BY21 358 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 ANGPTL4Q9BY76 406 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 PARP12Q9H0J9 701 aaKnown RBP12.89□□□□□ -0.35
HDAC6-220ENST00000477528 GPR160Q9UJ42 338 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 STRAPQ9Y3F4 350 aaKnown RBP12.89□□□□□ -0.35
HDAC6-220ENST00000477528 PUS1Q9Y606 427 aaKnown RBP eCLIP12.89□□□□□ -0.35
HDAC6-220ENST00000477528 IGHV1-45A0A0A0MS14 117 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 B4E171 279 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 B3GALNT1O75752 331 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 NXPH3O95157 252 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 FAM157BP0CG42 384 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 TSPAN7P41732 249 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 RPS11P62280 158 aaKnown RBP eCLIP12.89□□□□□ -0.35
HDAC6-220ENST00000477528 SIGLEC14Q08ET2 396 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 LTC4SQ16873 150 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 MICBQ29980 383 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 SPINK14Q6IE38 97 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 SLC25A47Q6Q0C1 308 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 UQCC3Q6UW78 93 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 NR2C2APQ86WQ0 139 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 RGP1Q92546 391 aaPredicted RBP12.89□□□□□ -0.35
HDAC6-220ENST00000477528 SOSTQ9BQB4 213 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 MEOX1P50221 254 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 GNG3P63215 75 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 INPP5JQ15735 1006 aaPredicted RBP12.89□□□□□ -0.35
HDAC6-220ENST00000477528 OR14K1Q8NGZ2 314 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 C1QTNF6Q9BXI9 259 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 SMCO4Q9NRQ5 59 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 TP53TG5Q9Y2B4 290 aa12.89□□□□□ -0.35
HDAC6-220ENST00000477528 MAP1BP46821 2468 aaKnown RBP12.89□□□□□ -0.35
HDAC6-220ENST00000477528 CD80P33681 288 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 F2RL1P55085 397 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 PRDX4Q13162 271 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 VHLLQ6RSH7 139 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 MITD1Q8WV92 249 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 GPR31O00270 319 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 HLA-HP01893 362 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 RAB32Q13637 225 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 SLC30A7Q8NEW0 376 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 TMEM38BQ9NVV0 291 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 ALPK2Q86TB3 2170 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 H3BMH7 237 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 SP6Q3SY56 376 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 CLEC18BQ6UXF7 455 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 APCDD1LQ8NCL9 501 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 ZBTB44Q8NCP5 570 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 GNPNAT1Q96EK6 184 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-220ENST00000477528 SPSB2Q99619 263 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 ANXA10Q9UJ72 324 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 PILRBQ9UKJ0 227 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 ARHGEF17Q96PE2 2063 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-220ENST00000477528 A0A0J9YW62 118 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 NME2P1O60361 137 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 CRHP06850 196 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 CELA2AP08217 269 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 UBE2KP61086 200 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 PDCD1Q15116 288 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 TMEM182Q6ZP80 229 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-220ENST00000477528 NMES1Q9C002 83 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 G6PC2Q9NQR9 355 aa12.88□□□□□ -0.35
HDAC6-220ENST00000477528 CTSDP07339 412 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-220ENST00000477528 DMBX1Q8NFW5 382 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 OR11L1Q8NGX0 322 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 TCTEX1D2Q8WW35 142 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 FBXW5Q969U6 566 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 FAM206AQ9NX38 181 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 A0A0U1RQV5 110 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 SSSCA1O60232 199 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 MT-CO2P00403 227 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 HPNP05981 417 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 ZNF674Q2M3X9 581 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 FAM27BQ5VT28 67 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 TMED3Q9Y3Q3 217 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 WDR1O75083 606 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 CST4P01036 141 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 C19orf57Q0VDD7 668 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 AVPI1Q5T686 147 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 TCEAL3Q969E4 200 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 TMEM231Q9H6L2 316 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 NAA60Q9H7X0 242 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 ADAP1O75689 374 aa12.87□□□□□ -0.35
HDAC6-220ENST00000477528 ZNF260Q3ZCT1 412 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms