RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 NARS2Q96I59 477 aaKnown RBP3.28□□□□□ -1.88
HMGB3-203ENST00000430118 C12orf66Q96MD2 445 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 LINC00052Q96N35 136 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 ZNF599Q96NL3 588 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 SLC6A7Q99884 636 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 MAPKAP1Q9BPZ7 522 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 TOLLIPQ9H0E2 274 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 MAGT1Q9H0U3 335 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 LIME1Q9H400 295 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 RHOJQ9H4E5 214 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 HEXA-AS1Q9H8Q6 139 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 TREM1Q9NP99 234 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 EXOSC3Q9NQT5 275 aaKnown RBP3.28□□□□□ -1.88
HMGB3-203ENST00000430118 POLE4Q9NR33 117 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 MED11Q9P086 117 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 OPTCQ9UBM4 332 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 CACNG5Q9UF02 275 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 OR12D3Q9UGF7 316 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 TBC1D24Q9ULP9 559 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 KCNIP3Q9Y2W7 256 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 HSPB11Q9Y547 144 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 PUS1Q9Y606 427 aaKnown RBP eCLIP3.28□□□□□ -1.88
HMGB3-203ENST00000430118 SVILO95425 2214 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 CCDC168Q8NDH2 2452 aa3.28□□□□□ -1.88
HMGB3-203ENST00000430118 HIVEP3Q5T1R4 2406 aa3.28□□□□□ -1.89
HMGB3-203ENST00000430118 CHD5Q8TDI0 1954 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 A0A087X0T9 212 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 CIB4A0PJX0 185 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 TSPAN11A1L157 253 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 FAM74A7A6NL05 159 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 ZNF99A8MXY4 864 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 PRR23D1E9PI22 279 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 DLGAP1O14490 977 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 CTNSO60931 367 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 WBP4O75554 376 aaKnown RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 SERPINA3P01011 423 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 IGHV3-9P01782 118 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 PPBPP02775 128 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 FGF4P08620 206 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 CD3GP09693 182 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 PRR23D2P0DMB1 279 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 SDC1P18827 310 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 PCMT1P22061 227 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 CRHBPP24387 322 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 MYL9P24844 172 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 IVDP26440 423 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 AK4P27144 223 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 TEAD1P28347 426 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 CALCRP30988 508 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 RPL4P36578 427 aaKnown RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 CA7P43166 264 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 GPR1P46091 355 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 OMPP47874 163 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 TGM4P49221 684 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 EFNB2P52799 333 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 AQP5P55064 265 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 NDUFV3P56181 108 aaKnown RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 RAB5BP61020 215 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 RRAS2P62070 204 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 ERVK-25P63136 954 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 ADARB1P78563 741 aaKnown RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 EWSR1Q01844 656 aaKnown RBP eCLIP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 RAB40BQ12829 278 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 IL18R1Q13478 541 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 ATP6AP1Q15904 470 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 CYP51A1Q16850 503 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 FAM83EQ2M2I3 478 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 FAM74A3Q4VXF1 159 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 SPANXN2Q5MJ10 180 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 AVPI1Q5T686 147 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 SYT6Q5T7P8 510 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 SYPL2Q5VXT5 272 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 NXNL2Q5VZ03 156 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 PVRIGQ6DKI7 326 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 OR8G2PQ6IF36 304 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 FRMPD2BQ6IN97 320 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 ACSM5Q6NUN0 579 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 BHLHA15Q7RTS1 189 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 PAQR7Q86WK9 346 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 ZNF491Q8N8L2 437 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 TMEM104Q8NE00 496 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 FBXO36Q8NEA4 188 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 FAM83FQ8NEG4 500 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 CCL4L1Q8NHW4 92 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 STOML3Q8TAV4 291 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 PATE1Q8WXA2 126 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 TMEM203Q969S6 136 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 PELI1Q96FA3 418 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 ZNF514Q96K75 400 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 C18orf12Q96KH6 178 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 Q96MT0 163 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 COL21A1Q96P44 957 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 KCNA7Q96RP8 456 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 HBEGFQ99075 208 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 OPRPNQ99935 248 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 NIPSNAP3BQ9BS92 247 aa3.27□□□□□ -1.89
HMGB3-203ENST00000430118 NKX6-2Q9C056 277 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 ZNF436Q9C0F3 470 aaPredicted RBP3.27□□□□□ -1.89
HMGB3-203ENST00000430118 TUBB1Q9H4B7 451 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms