RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 SCGB1A1P11684 91 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 PVRP15151 417 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 SHBQ15464 509 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 TMEM99Q8N816 258 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 C11orf94C9JXX5 98 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 RPL18Q07020 188 aaKnown RBP12.87□□□□□ -0.35
COL7A1-201ENST00000328333 C10orf35Q96D05 121 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 IL23AQ9NPF7 189 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 CTDSPLO15194 276 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 ACKR1Q16570 336 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 AMMECR1LQ6DCA0 310 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 C6orf201Q7Z4U5 140 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 DEFB132Q7Z7B7 95 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 NAA60Q9H7X0 242 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 USF3Q68DE3 2245 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 CDC34P49427 236 aaPredicted RBP12.87□□□□□ -0.35
COL7A1-201ENST00000328333 VMA21Q3ZAQ7 101 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 LRFN3Q9BTN0 628 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 COX6CP09669 75 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 SDF2Q99470 211 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 DPTQ07507 201 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 FAM24BQ8N5W8 94 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 NPPBP16860 134 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 ZNF687Q8N1G0 1237 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 OR10AD1Q8NGE0 317 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 OR52B4Q8NGK2 314 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 H1FXQ92522 213 aaKnown RBP12.87□□□□□ -0.35
COL7A1-201ENST00000328333 TEX37Q96LM6 180 aa12.87□□□□□ -0.35
COL7A1-201ENST00000328333 ACVR1Q04771 509 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 GRAMD2BQ96HH9 432 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 KLK8O60259 260 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 PSMB5P28074 263 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 TGFBR1P36897 503 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 RGRP47804 291 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 CTBSQ01459 385 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 SRSF9Q13242 221 aaKnown RBP eCLIP12.86□□□□□ -0.35
COL7A1-201ENST00000328333 CARFQ8N187 725 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 TAAR3PQ9P1P4 343 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 C1SP09871 688 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 P2RY1P47900 373 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 PMCHL1Q16048 86 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 PDPNQ86YL7 162 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 TXNRD2Q9NNW7 524 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 PARP11Q9NR21 331 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 UQCR10Q9UDW1 63 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 EPHA2P29317 976 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 DEGS2Q6QHC5 323 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 TUSC1Q2TAM9 212 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 MORN4Q8NDC4 146 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 RNF167Q9H6Y7 350 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 NEURL1O76050 574 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 BSXQ3C1V8 233 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 MRPS16Q9Y3D3 137 aaKnown RBP12.86□□□□□ -0.35
COL7A1-201ENST00000328333 TRAV34A0A0B4J273 112 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 LANCL1O43813 399 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 OR10G8Q8NGN5 311 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 OTOSQ8NHW6 89 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 CDCP1Q9H5V8 836 aa12.86□□□□□ -0.35
COL7A1-201ENST00000328333 PSME4Q14997 1843 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 OR2J2O76002 312 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 GLRA1P23415 457 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 XAF1Q6GPH4 301 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 OR2C3Q8N628 320 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 WBP2Q969T9 261 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 TOE1Q96GM8 510 aaKnown RBP12.85□□□□□ -0.35
COL7A1-201ENST00000328333 PLSCR3Q9NRY6 295 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 TTRP02766 147 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 HIST1H1EP10412 219 aaKnown RBP12.85□□□□□ -0.35
COL7A1-201ENST00000328333 IAPPP10997 89 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 NAT2P11245 290 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 TCTN3Q6NUS6 607 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 OVCH2Q7RTZ1 564 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 SCCPDHQ8NBX0 429 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 DOK4Q8TEW6 326 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 ZNF385DQ9H6B1 395 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 KLK11Q9UBX7 282 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 C9orf170A2RU37 121 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 VASH2Q86V25 355 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 LRRTM3Q86VH5 581 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 MUC20Q8N307 709 aaPredicted RBP12.85□□□□□ -0.35
COL7A1-201ENST00000328333 OPRM1P35372 400 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 C1orf61Q13536 156 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 MCHR2Q969V1 340 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 SLC25A33Q9BSK2 321 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 VAX2Q9UIW0 290 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 HS3ST3A1Q9Y663 406 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 QSER1Q2KHR3 1735 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 EFSO43281 561 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 TTC32Q5I0X7 151 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 TMEM251Q8N6I4 163 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 IGHA1P01876 353 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 IGHA2P01877 340 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 CA10Q9NS85 328 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 MS4A18H0YCH9 400 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 MS4A18Q3C1V0 323 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 MRGPRGQ86SM5 289 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 BCORP1Q8N888 145 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 XIRP1Q702N8 1843 aaKnown RBP12.85□□□□□ -0.35
COL7A1-201ENST00000328333 FREM1Q5H8C1 2179 aa12.85□□□□□ -0.35
COL7A1-201ENST00000328333 RPS16P62249 146 aaKnown RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms