RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 NRG2O14511 850 aaPredicted RBP10.29□□□□□ -0.76
VPS39-201ENST00000318006 HOXC4P09017 264 aaPredicted RBP10.29□□□□□ -0.76
VPS39-201ENST00000318006 ASCL1P50553 236 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 ZNF154Q13106 437 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 OTPQ5XKR4 325 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 DRAM2Q6UX65 266 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 Q6ZN92 141 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 MUCL1Q96DR8 90 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 MAP1LC3BQ9GZQ8 125 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 RAB33BQ9H082 229 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 PPP1R3EQ9H7J1 279 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 UBE2L5PA0A1B0GUS4 154 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 ONECUT2O95948 504 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 IGHA1P01876 353 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 EDN3P14138 238 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 ZNF345Q14585 488 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 OR2B11Q5JQS5 317 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 OR2C3Q8N628 320 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 ZNRF4Q8WWF5 429 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 THOC3Q96J01 351 aaKnown RBP10.29□□□□□ -0.76
VPS39-201ENST00000318006 OR51M1Q9H341 326 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 ST3GAL6Q9Y274 331 aa10.29□□□□□ -0.76
VPS39-201ENST00000318006 A0A1W2PPE2 198 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 GPANK1O95872 356 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 TMEM104Q8NE00 496 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 ERGIC1Q969X5 290 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 OR2A5Q96R48 311 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 FKBP11Q9NYL4 201 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 PITPNC1Q9UKF7 332 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 A0A087WUJ7 227 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 A0A0B4J2E0 115 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 A0A1B0GX12 115 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 A0A1W2PNR3 127 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 OR5H15A6NDH6 313 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 OR5H1A6NKK0 313 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 TIMM8AO60220 97 aaPredicted RBP10.28□□□□□ -0.76
VPS39-201ENST00000318006 NKX2-2O95096 273 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 SUB1P53999 127 aaKnown RBP eCLIP10.28□□□□□ -0.76
VPS39-201ENST00000318006 SHBQ15464 509 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 NSUN5P2Q63ZY6 315 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 DEFB123Q8N688 67 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 OR10A7Q8NGE5 316 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 OR2T10Q8NGZ9 312 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 RDH5Q92781 318 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 PIK3IP1Q96FE7 263 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 IL17BQ9UHF5 180 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 AMDHD2Q9Y303 409 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 NUP214P35658 2090 aaPredicted RBP10.28□□□□□ -0.76
VPS39-201ENST00000318006 LOC102723971A0A1B0GUV8 181 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 COL9A1P20849 921 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 SLC25A30Q5SVS4 291 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 YRDCQ86U90 279 aaKnown RBP10.28□□□□□ -0.76
VPS39-201ENST00000318006 OSR2Q8N2R0 312 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 ADGRG7Q96K78 797 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 CCDC74BQ96LY2 380 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 GABRG3Q99928 467 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 GHITMQ9H3K2 345 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 MED29Q9NX70 200 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 PIAS2O75928 621 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 FZD2Q14332 565 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 TCTN1Q2MV58 587 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 BSXQ3C1V8 233 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 NHLRC2Q8NBF2 726 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 CADM4Q8NFZ8 388 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 C20orf141Q9NUB4 165 aa10.28□□□□□ -0.76
VPS39-201ENST00000318006 TRBV5-3A0A0A0MS03 114 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 MED19A0JLT2 244 aaPredicted RBP10.27□□□□□ -0.76
VPS39-201ENST00000318006 KIAA1324LA8MWY0 1029 aaPredicted RBP10.27□□□□□ -0.76
VPS39-201ENST00000318006 FCN1O00602 326 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 ADAP1O75689 374 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 OR10J1P30954 320 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 THBS4P35443 961 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 ZNF121P58317 390 aaPredicted RBP10.27□□□□□ -0.76
VPS39-201ENST00000318006 C21orf58P58505 322 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 TMEM92Q6UXU6 159 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 GPBAR1Q8TDU6 330 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 PP6455Q8WZ26 134 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 RAB40CQ96S21 281 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 PARP11Q9NR21 331 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 SLC2A9Q9NRM0 540 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 NAT8Q9UHE5 227 aa10.27□□□□□ -0.76
VPS39-201ENST00000318006 MRPS2Q9Y399 296 aaKnown RBP10.27□□□□□ -0.76
VPS39-201ENST00000318006 LANCL1O43813 399 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 TBXA2RP21731 343 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 EDDM3BP56851 147 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 CDC20BQ86Y33 519 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 OR4D9Q8NGE8 314 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 MRGPRX4Q96LA9 322 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 RTL8AQ9BWD3 113 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 TIMM10BQ9Y5J6 103 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 MFSD2BA6NFX1 497 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 FAM24AA6NFZ4 105 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 DBX1A6NMT0 343 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 ZNF891A8MT65 544 aaPredicted RBP10.27□□□□□ -0.77
VPS39-201ENST00000318006 GPR37O15354 613 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 OGG1O15527 345 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 ZNF737O75373 536 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 CHRNA7P36544 502 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 ERVS71-1P61550 626 aa10.27□□□□□ -0.77
VPS39-201ENST00000318006 UBE2V2Q15819 145 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms