RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CKLFQ9UBR5 152 aa8.35□□□□□ -1.07
CLN3-261ENST00000637686 LRP5LA4QPB2 252 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 PDCD5O14737 125 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 PIN1P1O15428 100 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 ALDOBP05062 364 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 HEXAP06865 529 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 SRMP19623 302 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 CALRP27797 417 aaKnown RBP8.34□□□□□ -1.07
CLN3-261ENST00000637686 RBMXP38159 391 aaKnown RBP8.34□□□□□ -1.07
CLN3-261ENST00000637686 GPR6P46095 362 aaPredicted RBP8.34□□□□□ -1.07
CLN3-261ENST00000637686 SCAND1P57086 179 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 TMEM33P57088 247 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 VBP1P61758 197 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 NCS1P62166 190 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 FAM3AP98173 230 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 KRTAP1-1Q07627 177 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 TMEM249Q2WGJ8 235 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 HFEQ30201 348 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 RDH10Q8IZV5 341 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 OR10AD1Q8NGE0 317 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 OR51A4Q8NGJ6 313 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 OR13C5Q8NGS8 318 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 OR10AC1Q8NH08 325 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 DYNC2LI1Q8TCX1 351 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 ITLN1Q8WWA0 313 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 CCL17Q92583 94 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 SLC25A46Q96AG3 418 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 KCTD12Q96CX2 325 aaKnown RBP8.34□□□□□ -1.07
CLN3-261ENST00000637686 OR2V2Q96R30 315 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 CHST5Q9GZS9 411 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 PLEKHA1Q9HB21 404 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 NOX4Q9NPH5 578 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 PTTG2Q9NZH5 202 aa8.34□□□□□ -1.07
CLN3-261ENST00000637686 NOP16Q9Y3C1 178 aaKnown RBP8.34□□□□□ -1.07
CLN3-261ENST00000637686 IGHV3-64DA0A0J9YX35 117 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 ZNF816-ZNF321PA0A0X1KG74 233 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 F5H5P2 479 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 WNT9BO14905 357 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 MLNRO43193 412 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 CST4P01036 141 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 IGHV4-31P0DP07 118 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 ZNF20P17024 532 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 CA6P23280 308 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 SOX6P35712 828 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 SERPINB10P48595 397 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 GSK3AP49840 483 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 CAPZA1P52907 286 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 PPP3R1P63098 170 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 SPCS2Q15005 226 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 DGUOKQ16854 277 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 CNPY1Q3B7I2 92 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 GFOD2Q3B7J2 385 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 AVPI1Q5T686 147 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 COMMD2Q86X83 199 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 DNAAF1Q8NEP3 725 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 OR56B2PQ8NGI1 322 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 SPSB1Q96BD6 273 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 FOXRED1Q96CU9 486 aaPredicted RBP8.33□□□□□ -1.08
CLN3-261ENST00000637686 CPNE2Q96FN4 548 aaPredicted RBP8.33□□□□□ -1.08
CLN3-261ENST00000637686 FAM71F1Q96KD3 344 aaPredicted RBP8.33□□□□□ -1.08
CLN3-261ENST00000637686 MEGF10Q96KG7 1140 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 SLC22A4Q9H015 551 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 NARFLQ9H6Q4 476 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 TCF7L1Q9HCS4 588 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 MRPL15Q9P015 296 aaKnown RBP8.33□□□□□ -1.08
CLN3-261ENST00000637686 IL19Q9UHD0 177 aa8.33□□□□□ -1.08
CLN3-261ENST00000637686 YLPM1P49750 1951 aaKnown RBP8.32□□□□□ -1.08
CLN3-261ENST00000637686 A0A075B6Q4 140 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 A0A1B0GWJ7 208 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 NOTOA8MTQ0 251 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 CLDN25C9JDP6 229 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 SULT1B1O43704 296 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 CD5LO43866 347 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 CDRT1O95170 752 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 ZNF182P17025 639 aaPredicted RBP8.32□□□□□ -1.08
CLN3-261ENST00000637686 TNFRSF1AP19438 455 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 RAB3AP20336 220 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 RAB3BP20337 219 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 IL2RGP31785 369 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 SDC2P34741 201 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 GNALP38405 381 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 SOX2P48431 317 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 SRP9P49458 86 aaKnown RBP8.32□□□□□ -1.08
CLN3-261ENST00000637686 RORCP51449 518 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 LSM3P62310 102 aaKnown RBP8.32□□□□□ -1.08
CLN3-261ENST00000637686 INSL4Q14641 139 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 CNN3Q15417 329 aaKnown RBP8.32□□□□□ -1.08
CLN3-261ENST00000637686 OR8G1Q15617 311 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 ODF4Q2M2E3 257 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 CLVS2Q5SYC1 327 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 CYB5R2Q6BCY4 276 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 LRRTM1Q86UE6 522 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 OR1M1Q8NGA1 313 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 NDNFQ8TB73 568 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 ACOT12Q8WYK0 555 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 AP3S1Q92572 193 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 DVL3Q92997 716 aaPredicted RBP8.32□□□□□ -1.08
CLN3-261ENST00000637686 FGGYQ96C11 551 aa8.32□□□□□ -1.08
CLN3-261ENST00000637686 ADAT3Q96EY9 351 aaPredicted RBP8.32□□□□□ -1.08
CLN3-261ENST00000637686 UQCC2Q9BRT2 126 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms