RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 LY6G5BQ8NDX9 201 aa16.78■□□□□ 0.28
CLK3-225ENST00000569063 ANGPTL6Q8NI99 470 aa16.78■□□□□ 0.28
CLK3-225ENST00000569063 ZNF671Q8TAW3 534 aa16.78■□□□□ 0.28
CLK3-225ENST00000569063 AQP3Q92482 292 aa16.78■□□□□ 0.28
CLK3-225ENST00000569063 RORBQ92753 470 aa16.78■□□□□ 0.28
CLK3-225ENST00000569063 GCDHQ92947 438 aaPredicted RBP16.78■□□□□ 0.28
CLK3-225ENST00000569063 C1orf147Q96MC9 270 aaPredicted RBP16.78■□□□□ 0.28
CLK3-225ENST00000569063 TBX15Q96SF7 602 aa16.78■□□□□ 0.28
CLK3-225ENST00000569063 SIRPDQ9H106 197 aa16.78■□□□□ 0.28
CLK3-225ENST00000569063 CNTD2Q9H8S5 307 aa16.78■□□□□ 0.28
CLK3-225ENST00000569063 SNTG1Q9NSN8 517 aa16.78■□□□□ 0.28
CLK3-225ENST00000569063 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLK3-225ENST00000569063 SLC22A13Q9Y226 551 aa16.78■□□□□ 0.28
CLK3-225ENST00000569063 SOX21Q9Y651 276 aaPredicted RBP16.78■□□□□ 0.28
CLK3-225ENST00000569063 DNAJC9-AS1A6NH13 148 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 GLRA1P23415 457 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 BAMBIQ13145 260 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 OCLNQ16625 522 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 ZIK1Q3SY52 487 aaPredicted RBP16.77■□□□□ 0.28
CLK3-225ENST00000569063 LRRC10Q5BKY1 277 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 MEDAGQ5VYS4 303 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 FGFRL1Q8N441 504 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 MED30Q96HR3 178 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 PRDM13Q9H4Q3 707 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 S100A14Q9HCY8 104 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 NLKQ9UBE8 527 aa16.77■□□□□ 0.28
CLK3-225ENST00000569063 NKX6-3A6NJ46 265 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 OR2AT4A6NND4 320 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 CLDN34H7C241 214 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 ENTPD6O75354 484 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 ACAA1P09110 424 aaPredicted RBP16.76■□□□□ 0.27
CLK3-225ENST00000569063 ISL1P61371 349 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 ZNF85Q03923 595 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 IKZF1Q13422 519 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 PDCD1Q15116 288 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 HAGHLQ6PII5 290 aaPredicted RBP16.76■□□□□ 0.27
CLK3-225ENST00000569063 BRD3OSQ6XYD6 125 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 TMIGD2Q96BF3 282 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 GAFA1Q96PS6 74 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 C9orf16Q9BUW7 83 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 RASL12Q9NYN1 266 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 KPTNQ9Y664 436 aa16.76■□□□□ 0.27
CLK3-225ENST00000569063 CENPVL3A0A0U1RRI6 287 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 PQLC2LA1A4F0 135 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 J3QRE1 110 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 ARF6P62330 175 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 IL13RA1P78552 427 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 CDONQ4KMG0 1287 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 ZNF573Q86YE8 665 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 CCDC54Q8NEL0 328 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 C8orf46Q8TAG6 207 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 DUX5Q96PT3 197 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 MBOAT4Q96T53 435 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 DCTN5Q9BTE1 182 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 GPR173Q9NS66 373 aa16.75■□□□□ 0.27
CLK3-225ENST00000569063 SIGLEC5O15389 551 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 RNASE1P07998 156 aaKnown RBP16.74■□□□□ 0.27
CLK3-225ENST00000569063 SELLP14151 372 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 ACTC1P68032 377 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 ACTA1P68133 377 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 SLC9A3R2Q15599 337 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 DGUOKQ16854 277 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 KCTD20Q7Z5Y7 419 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 PQLC1Q8N2U9 271 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 POC1AQ8NBT0 407 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 RNF166Q96A37 237 aaPredicted RBP16.74■□□□□ 0.27
CLK3-225ENST00000569063 SLC25A28Q96A46 364 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 RNFT2Q96EX2 444 aa16.74■□□□□ 0.27
CLK3-225ENST00000569063 IGKV1D-17A0A075B6S4 117 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 A0A1B0GVI7 797 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 A6NIN4 97 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 SNTNA6NMZ2 147 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 J3QT63 122 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 HAX1O00165 279 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 SYT7O43581 403 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 NOS1APO75052 506 aaPredicted RBP16.73■□□□□ 0.27
CLK3-225ENST00000569063 TFF1P04155 84 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 PSG2P11465 335 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 GABRB1P18505 474 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 CFPP27918 469 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 HAAOP46952 286 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 CAV3P56539 151 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 ODF4Q2M2E3 257 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 DEFB112Q30KQ8 113 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 TP53I3Q53FA7 332 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 FAM220AQ7Z4H9 259 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 PRSS35Q8N3Z0 413 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 KIR3DL3Q8N743 410 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 GATAD2BQ8WXI9 593 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 SLC29A1Q99808 456 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 ACOXLQ9NUZ1 547 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 SLC25A10Q9UBX3 287 aaPredicted RBP16.73■□□□□ 0.27
CLK3-225ENST00000569063 GNG8Q9UK08 70 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 ZNF222Q9UK12 451 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 POLDIP2Q9Y2S7 368 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 GMPPBQ9Y5P6 360 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 ANK2Q01484 3957 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 FBN3Q75N90 2809 aa16.73■□□□□ 0.27
CLK3-225ENST00000569063 IGHV1-69DA0A0B4J2H0 117 aa16.72■□□□□ 0.27
CLK3-225ENST00000569063 MDFIC2A0A1B0GVS7 189 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms