RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 NRIP2Q9BQI9 281 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 PSMG3Q9BT73 122 aaPredicted RBP4.38□□□□□ -1.71
VPS35-205ENST00000563984 TMEM121Q9BTD3 319 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 PBDC1Q9BVG4 233 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 SLC39A8Q9C0K1 460 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 NAA50Q9GZZ1 169 aaKnown RBP4.38□□□□□ -1.71
VPS35-205ENST00000563984 DEFB129Q9H1M3 183 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 ZNF385DQ9H6B1 395 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 TAF9BQ9HBM6 251 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 SLC7A10Q9NS82 523 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 RBFOX1Q9NWB1 397 aaKnown RBP4.38□□□□□ -1.71
VPS35-205ENST00000563984 MED29Q9NX70 200 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 PILRBQ9UKJ0 227 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 ABCA9Q8IUA7 1624 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 MYH9P35579 1960 aaKnown RBP4.38□□□□□ -1.71
VPS35-205ENST00000563984 RIC1Q4ADV7 1423 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 TNS3Q68CZ2 1445 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 NSD3Q9BZ95 1437 aa4.38□□□□□ -1.71
VPS35-205ENST00000563984 PRXQ9BXM0 1461 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 PREX2Q70Z35 1606 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 A0A087WUJ7 227 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 BORCS7-ASMTA0A0B4J1R7 106 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 TINCRA0A1B0GVN0 87 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 MAP1LC3B2A6NCE7 125 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 ZNF726A6NNF4 738 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 DHRS7CA6NNS2 312 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 E5RGE8 158 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 RPL36A-HNRNPH2H7BZ11 118 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 J3QR06 171 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 SIRPB1O00241 398 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 UPK1AO00322 258 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 HMGB3O15347 200 aaKnown RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 HCRTR1O43613 425 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 ENSAO43768 121 aaKnown RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 PRAF2O60831 178 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 OPN1SWP03999 348 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 APODP05090 189 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 SULT1A3P0DMM9 295 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 SULT1A4P0DMN0 295 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 CHRNB2P17787 502 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 RPS3P23396 243 aaKnown RBP eCLIP4.37□□□□□ -1.71
VPS35-205ENST00000563984 HTR1DP28221 377 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 PRDX3P30048 256 aaKnown RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 HOXD3P31249 432 aaPredicted RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 DCTP40126 519 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 GABRA2P47869 451 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 STC1P52823 247 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 TMEM50BP56557 158 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 UBE2MP61081 183 aaKnown RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 SNRPD1P62314 119 aaKnown RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 RHOGP84095 191 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 RUNX1Q01196 453 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 HERPUD1Q15011 391 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 TBC1D28Q2M2D7 210 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 SNAI3Q3KNW1 292 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 GGTA1PQ4G0N0 100 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 NHLRC3Q5JS37 347 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 LY6G6FQ5SQ64 297 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 SERTAD4-AS1Q5TG53 156 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 LYPLAL1Q5VWZ2 237 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 ZNF776Q68DI1 518 aaPredicted RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 AGTRAPQ6RW13 159 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 BTNL8Q6UX41 500 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 ZNF841Q6ZN19 808 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 TPRG1Q6ZUI0 275 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 TCTEX1D1Q8N7M0 179 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 OR52I1Q8NGK6 324 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 SAP25Q8TEE9 199 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 TADA1Q96BN2 335 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 PYCR2Q96C36 320 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 CCDC126Q96EE4 140 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 MRPS24Q96EL2 167 aaKnown RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 CAPNS2Q96L46 248 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 ERMAPQ96PL5 475 aaPredicted RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 NEDD4LQ96PU5 975 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 RNF157Q96PX1 679 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 FRG2BQ96QU4 278 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 ATOH8Q96SQ7 321 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 CSF3RQ99062 836 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 GPR22Q99680 433 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 ATF6BQ99941 703 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 HCAR1Q9BXC0 346 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 MAP1LC3BQ9GZQ8 125 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 CPVLQ9H3G5 476 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 SRMSQ9H3Y6 488 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 MAP1LC3AQ9H492 121 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 METTL17Q9H7H0 456 aaPredicted RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 TUBA4BQ9H853 241 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 MRPL17Q9NRX2 175 aaKnown RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 MRPL16Q9NX20 251 aaKnown RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 COMMD3Q9UBI1 195 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 GNG12Q9UBI6 72 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 B4GALT7Q9UBV7 327 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 NAT8Q9UHE5 227 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 ERG28Q9UKR5 140 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 YARS2Q9Y2Z4 477 aaKnown RBP4.37□□□□□ -1.71
VPS35-205ENST00000563984 FAM96BQ9Y3D0 163 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 RNF115Q9Y4L5 304 aa4.37□□□□□ -1.71
VPS35-205ENST00000563984 TIMM10BQ9Y5J6 103 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms