RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 A6NIN4 97 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 H0YL77 283 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 H3BSH0 61 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 IFNL4K9M1U5 179 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 LDLRAD4O15165 306 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 MAS1P04201 325 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 SOD3P08294 240 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 UBBP0CG47 229 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 CALCBP10092 127 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 BMP4P12644 408 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF182P17025 639 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-211ENST00000552338 THBS2P35442 1172 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF93P35789 620 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-211ENST00000552338 SERPINB10P48595 397 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 RORCP51449 518 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 LSM3P62310 102 aaKnown RBP8.12□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF154Q13106 437 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 PDZK1IP1Q13113 114 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 TESK1Q15569 626 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 OR8G1Q15617 311 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 DDI2Q5TDH0 399 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 PLCXD3Q63HM9 321 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 ELP2Q6IA86 826 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 SFXN4Q6P4A7 337 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 WDR86Q86TI4 376 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 CDH24Q86UP0 819 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 BHLHE23Q8NDY6 225 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 OR6M1Q8NGM8 313 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 OR10Z1Q8NGY1 313 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 ACOT12Q8WYK0 555 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 RNF170Q96K19 258 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 MEGF10Q96KG7 1140 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 C1orf147Q96MC9 270 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-211ENST00000552338 ADAT1Q9BUB4 502 aaKnown RBP8.12□□□□□ -1.11
LIMA1-211ENST00000552338 SLIRPQ9GZT3 109 aaKnown RBP8.12□□□□□ -1.11
LIMA1-211ENST00000552338 CLEC4MQ9H2X3 399 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-211ENST00000552338 CNTD2Q9H8S5 307 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 MSL2Q9HCI7 577 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 ABRACLQ9P1F3 81 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 STEAP1Q9UHE8 339 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 FZR1Q9UM11 496 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 AK6Q9Y3D8 172 aaKnown RBP8.12□□□□□ -1.11
LIMA1-211ENST00000552338 PMF1-BGLAPU3KQ54 211 aa8.12□□□□□ -1.11
LIMA1-211ENST00000552338 A0A1W2PPW3 197 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 A1L4Q6 167 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF732B4DXR9 585 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF780AO75290 641 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-211ENST00000552338 LHBP01229 141 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 CLEC2LP0C7M8 214 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 TNFRSF1AP19438 455 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 TNFSF4P23510 183 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 PTGFRP43088 359 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 SRP9P49458 86 aaKnown RBP8.11□□□□□ -1.11
LIMA1-211ENST00000552338 MTCP1P56278 107 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 ERVK11-1P61568 191 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 SNRPD2P62316 118 aaKnown RBP8.11□□□□□ -1.11
LIMA1-211ENST00000552338 QRFPP83859 136 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 NKPD1Q17RQ9 610 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 OR8S1Q8NH09 359 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 NDNFQ8TB73 568 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 TBC1D15Q8TC07 691 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 NEU4Q8WWR8 484 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-211ENST00000552338 AQP3Q92482 292 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 MRPS24Q96EL2 167 aaKnown RBP8.11□□□□□ -1.11
LIMA1-211ENST00000552338 ELMOD3Q96FG2 381 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 SPATA2Q9UM82 520 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 COL12A1Q99715 3063 aa8.11□□□□□ -1.11
LIMA1-211ENST00000552338 TMEM14DPA8MWL7 114 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 F5H5P2 479 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 J3QT63 122 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 AKR7A2O43488 359 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 KDM4BO94953 1096 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 BPNT1O95861 308 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 HCKP08631 526 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 HTR2CP28335 458 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 SOX6P35712 828 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 HAAOP46952 286 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 GPM6AP51674 278 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 BMXP51813 675 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 OR10A3P58181 314 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 TNFAIP6P98066 277 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-211ENST00000552338 GPR176Q14439 515 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 DGUOKQ16854 277 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 NHLRC3Q5JS37 347 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 OR2W3Q7Z3T1 314 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 RNF144BQ7Z419 303 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 ANGPTL5Q86XS5 388 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 CALHM1Q8IU99 346 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 MKXQ8IYA7 352 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 PNLDC1Q8NA58 520 aaKnown RBP8.1□□□□□ -1.11
LIMA1-211ENST00000552338 SCCPDHQ8NBX0 429 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 OR2Z1Q8NG97 314 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 OR4D6Q8NGJ1 314 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 OR51T1Q8NGJ9 327 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF671Q8TAW3 534 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 RAB1BQ9H0U4 201 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 MMP27Q9H306 513 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 HES4Q9HCC6 221 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 PCDHB16Q9NRJ7 776 aa8.1□□□□□ -1.11
LIMA1-211ENST00000552338 ZNF701Q9NV72 531 aaPredicted RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms