RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 MTNR1BP49286 362 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 ATP1B3P54709 279 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 ZNF826PQ6ZT77 177 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 MOGAT3Q86VF5 341 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 TGIF2LYQ8IUE0 185 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 C11orf53Q8IXP5 236 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 SCCPDHQ8NBX0 429 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 NEU4Q8WWR8 484 aaPredicted RBP13.75□□□□□ -0.21
LSM1-204ENST00000522515 GFI1Q99684 422 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 TLNRD1Q9H1K6 362 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 NEK6Q9HC98 313 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 ZNF701Q9NV72 531 aaPredicted RBP13.75□□□□□ -0.21
LSM1-204ENST00000522515 TREM2Q9NZC2 230 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 AK6Q9Y3D8 172 aaKnown RBP13.75□□□□□ -0.21
LSM1-204ENST00000522515 CACNG2Q9Y698 323 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 CHD3Q12873 2000 aaKnown RBP13.75□□□□□ -0.21
LSM1-204ENST00000522515 USF3Q68DE3 2245 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 LRP5LA4QPB2 252 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 CDIPTO14735 213 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 CDC14BO60729 498 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 SDC2P34741 201 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 ZNF93P35789 620 aaPredicted RBP13.75□□□□□ -0.21
LSM1-204ENST00000522515 PMELP40967 661 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 TMBIM6P55061 237 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 HAGHLQ6PII5 290 aaPredicted RBP13.75□□□□□ -0.21
LSM1-204ENST00000522515 LYPD6Q86Y78 171 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 ZNF573Q86YE8 665 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 ZNF420Q8TAQ5 688 aaPredicted RBP13.75□□□□□ -0.21
LSM1-204ENST00000522515 RBM38Q9H0Z9 239 aaKnown RBP13.75□□□□□ -0.21
LSM1-204ENST00000522515 PPP1R3CQ9UQK1 317 aa13.75□□□□□ -0.21
LSM1-204ENST00000522515 POLQO75417 2590 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 SMIM30A4D0T7 59 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 MEGF11A6BM72 1044 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 DPPA5A6NC42 116 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 A6NLC8 198 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 LYNX1G3V0Z9 82 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 CDRT1O95170 752 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 F12P00748 615 aaPredicted RBP13.74□□□□□ -0.21
LSM1-204ENST00000522515 PLATP00750 562 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 IGHV4-39P01824 125 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 CLEC2LP0C7M8 214 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 LYNX1P0DP58 116 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 EFNA4P52798 201 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 MXD1Q05195 221 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 NR2C2APQ86WQ0 139 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 JAGN1Q8N5M9 183 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 NKAIN3Q8N8D7 197 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 OR5D18Q8NGL1 313 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 RAB2BQ8WUD1 216 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 AQP3Q92482 292 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 GPER1Q99527 375 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 C1orf123Q9NWV4 160 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 EDARQ9UNE0 448 aa13.74□□□□□ -0.21
LSM1-204ENST00000522515 IGHV1-69-2A0A0G2JMI3 117 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 TRIM64BA6NI03 449 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 SPRY1O43609 319 aaPredicted RBP13.73□□□□□ -0.21
LSM1-204ENST00000522515 SYNGR1O43759 233 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 RHBDL1O75783 438 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 CD37P11049 281 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 DAOP14920 347 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 RAB3BP20337 219 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 DNASE1P24855 282 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 COL8A2P25067 703 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 POU3F4P49335 361 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 OR10A3P58181 314 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 ZP1P60852 638 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 WDR82Q6UXN9 313 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 CDH26Q8IXH8 852 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 YIPF5Q969M3 257 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 ERGIC1Q969X5 290 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 ISOC1Q96CN7 298 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 METTL17Q9H7H0 456 aaPredicted RBP13.73□□□□□ -0.21
LSM1-204ENST00000522515 FN3KRPQ9HA64 309 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 DCAF16Q9NXF7 216 aa13.73□□□□□ -0.21
LSM1-204ENST00000522515 CCDC160A6NGH7 325 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 J3QT63 122 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 PDCD5O14737 125 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 PAX1P15863 534 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 MPZP25189 248 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 OR3A4PP47883 348 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 PTH2RP49190 550 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 ATP5J2P56134 94 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 CAV3P56539 151 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 HOXA4Q00056 320 aaPredicted RBP13.72□□□□□ -0.21
LSM1-204ENST00000522515 PDZK1IP1Q13113 114 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 GLT8D1Q68CQ7 371 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 TPRA1Q86W33 373 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 Q8TCH9 128 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 CCL17Q92583 94 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 RDH5Q92781 318 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 CPNE2Q96FN4 548 aaPredicted RBP13.72□□□□□ -0.21
LSM1-204ENST00000522515 PERPQ96FX8 193 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 GSX2Q9BZM3 304 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 PKIBQ9C010 78 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 CNTD2Q9H8S5 307 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 V9GY05 133 aa13.72□□□□□ -0.21
LSM1-204ENST00000522515 DYSFO75923 2080 aa13.71□□□□□ -0.21
LSM1-204ENST00000522515 A0A0G2JK05 382 aa13.71□□□□□ -0.21
LSM1-204ENST00000522515 hCG_1807616A0A1W2PRN6 198 aa13.71□□□□□ -0.21
LSM1-204ENST00000522515 H3BMQ9 156 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms