RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 APCP25054 2843 aa10.36□□□□□ -0.75
SDC1-206ENST00000482879 TACC2O95359 2948 aa10.36□□□□□ -0.75
SDC1-206ENST00000482879 SHISA3A0PJX4 238 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 CCDC160A6NGH7 325 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 TRIM64BA6NI03 449 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 CDC14BO60729 498 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 NOL3O60936 208 aaKnown RBP10.35□□□□□ -0.75
SDC1-206ENST00000482879 CDRT1O95170 752 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 PTBP3O95758 552 aaKnown RBP10.35□□□□□ -0.75
SDC1-206ENST00000482879 F12P00748 615 aaPredicted RBP10.35□□□□□ -0.75
SDC1-206ENST00000482879 SDC2P34741 201 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 ZNF93P35789 620 aaPredicted RBP10.35□□□□□ -0.75
SDC1-206ENST00000482879 TGFBR1P36897 503 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 GATA4P43694 442 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 HAAOP46952 286 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 MTNR1BP49286 362 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 POU3F4P49335 361 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 EFNA4P52798 201 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 TMBIM6P55061 237 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 NCS1P62166 190 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 KISS1Q15726 138 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 CTF1Q16619 201 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 GLT8D1Q68CQ7 371 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 HAGHLQ6PII5 290 aaPredicted RBP10.35□□□□□ -0.75
SDC1-206ENST00000482879 C11orf53Q8IXP5 236 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 JAGN1Q8N5M9 183 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 NKAIN3Q8N8D7 197 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 ZNF420Q8TAQ5 688 aaPredicted RBP10.35□□□□□ -0.75
SDC1-206ENST00000482879 ERGIC1Q969X5 290 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 CPNE2Q96FN4 548 aaPredicted RBP10.35□□□□□ -0.75
SDC1-206ENST00000482879 NKX3-1Q99801 234 aaPredicted RBP10.35□□□□□ -0.75
SDC1-206ENST00000482879 FN3KRPQ9HA64 309 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 GCM1Q9NP62 436 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 ZNF701Q9NV72 531 aaPredicted RBP10.35□□□□□ -0.75
SDC1-206ENST00000482879 C1orf123Q9NWV4 160 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 TREM2Q9NZC2 230 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 PPP1R3CQ9UQK1 317 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 CEPT1Q9Y6K0 416 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 FBN2P35556 2912 aa10.35□□□□□ -0.75
SDC1-206ENST00000482879 NAV2Q8IVL1 2488 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 ITPR2Q14571 2701 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 NBPF19A0A087WUL8 3843 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 IGHV1-69-2A0A0G2JMI3 117 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 hCG_1807616A0A1W2PRN6 198 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 DPPA5A6NC42 116 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 J3QT63 122 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 CDIPTO14735 213 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 LY6HO94772 140 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 PLATP00750 562 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 CLEC2LP0C7M8 214 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 DAOP14920 347 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 RAB3BP20337 219 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 COL8A2P25067 703 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 PMELP40967 661 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 SERPINB10P48595 397 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 PTH2RP49190 550 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 PSMD7P51665 324 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 ATP5J2P56134 94 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 MXD1Q05195 221 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 ZNF826PQ6ZT77 177 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 TPRA1Q86W33 373 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 CALHM1Q8IU99 346 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 CDH26Q8IXH8 852 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 PNLDC1Q8NA58 520 aaKnown RBP10.34□□□□□ -0.75
SDC1-206ENST00000482879 OR5D18Q8NGL1 313 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 OR11L1Q8NGX0 322 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 ZNF671Q8TAW3 534 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 RAB2BQ8WUD1 216 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 AQP3Q92482 292 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 RDH5Q92781 318 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 FOXRED1Q96CU9 486 aaPredicted RBP10.34□□□□□ -0.75
SDC1-206ENST00000482879 GFI1Q99684 422 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 BCL7BQ9BQE9 202 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 TLNRD1Q9H1K6 362 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 METTL17Q9H7H0 456 aaPredicted RBP10.34□□□□□ -0.75
SDC1-206ENST00000482879 BEX4Q9NWD9 120 aaPredicted RBP10.34□□□□□ -0.75
SDC1-206ENST00000482879 V9GY05 133 aa10.34□□□□□ -0.75
SDC1-206ENST00000482879 FLNBO75369 2602 aaKnown RBP10.34□□□□□ -0.75
SDC1-206ENST00000482879 SMIM30A4D0T7 59 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 LYNX1G3V0Z9 82 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 SPRY1O43609 319 aaPredicted RBP10.33□□□□□ -0.76
SDC1-206ENST00000482879 SYNGR1O43759 233 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 RHBDL1O75783 438 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 CYB5AP00167 134 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 IGHV4-39P01824 125 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 TMEM225BP0DP42 221 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 LYNX1P0DP58 116 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 IRF2P14316 349 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 PAX1P15863 534 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 OR10A3P58181 314 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 PDZK1IP1Q13113 114 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 HNRNPA0Q13151 305 aaKnown RBP10.33□□□□□ -0.76
SDC1-206ENST00000482879 HFEQ30201 348 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 CRIP3Q6Q6R5 217 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 WDR82Q6UXN9 313 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 SLC25A26Q70HW3 274 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 TGIF2LYQ8IUE0 185 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 MKXQ8IYA7 352 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 TNFAIP8L1Q8WVP5 186 aa10.33□□□□□ -0.76
SDC1-206ENST00000482879 CCL17Q92583 94 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms