RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 MAGEB3O15480 346 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 NDUFA2O43678 99 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 ATF1P18846 271 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 RBP2P50120 134 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 ATP1B3P54709 279 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 UBE2V2Q15819 145 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 HAGHLQ6PII5 290 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-204ENST00000463487 LHFPL2Q6ZUX7 228 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 NLRC3Q7RTR2 1065 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 PARP16Q8N5Y8 322 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 ZFP41Q8N8Y5 198 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 NPRL2Q8WTW4 380 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 SGCDQ92629 289 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 UFD1Q92890 307 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 TMEM106AQ96A25 262 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 CKLFQ9UBR5 152 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 SIRT4Q9Y6E7 314 aaPredicted RBP16.63■□□□□ 0.25
COL9A3-204ENST00000463487 MED13LQ71F56 2210 aa16.63■□□□□ 0.25
COL9A3-204ENST00000463487 CR1P17927 2039 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 OOEPA6NGQ2 149 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 CYB5AP00167 134 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 IGHV4-31P0DP07 118 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 MUC1P15941 1255 aaPredicted RBP16.62■□□□□ 0.25
COL9A3-204ENST00000463487 MAPK3P27361 379 aaPredicted RBP16.62■□□□□ 0.25
COL9A3-204ENST00000463487 SOX2P48431 317 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 PPP3R1P63098 170 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 GPR50Q13585 617 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 MICBQ29980 383 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 ZNF404Q494X3 552 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 DMRTC1Q5HYR2 192 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 C11orf53Q8IXP5 236 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 MS4A15Q8N5U1 240 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 GCSAMQ8N6F7 178 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 OR13C9Q8NGT0 318 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 OPALINQ96PE5 141 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 OR5M11Q96RB7 305 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 ISYNA1Q9NPH2 558 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 DNAJB11Q9UBS4 358 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 MIOXQ9UGB7 285 aa16.62■□□□□ 0.25
COL9A3-204ENST00000463487 LSM2Q9Y333 95 aaKnown RBP16.62■□□□□ 0.25
COL9A3-204ENST00000463487 VPS13CQ709C8 3753 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 SRRM5B3KS81 715 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 B4DSR2 109 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 WNT9BO14905 357 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 SULT1B1O43704 296 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 CD5LO43866 347 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 ALX3O95076 343 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 ZNF205O95201 554 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 LHBP01229 141 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 IGHV2-5P01817 119 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 HSMCR30P0CW71 290 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 RAB3AP20336 220 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 AZGP1P25311 298 aaKnown RBP16.61■□□□□ 0.25
COL9A3-204ENST00000463487 CD80P33681 288 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 Q499Y3 187 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 DCDC5Q6ZRR9 648 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 LINC01356Q8N9X3 169 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 AQP3Q92482 292 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 C12orf43Q96C57 262 aaKnown RBP16.61■□□□□ 0.25
COL9A3-204ENST00000463487 PGLYRP3Q96LB9 341 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 PKIBQ9C010 78 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 FGF23Q9GZV9 251 aaPredicted RBP16.61■□□□□ 0.25
COL9A3-204ENST00000463487 PATZ1Q9HBE1 687 aaKnown RBP16.61■□□□□ 0.25
COL9A3-204ENST00000463487 TMEM165Q9HC07 324 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 CELSR1Q9NYQ6 3014 aa16.61■□□□□ 0.25
COL9A3-204ENST00000463487 C3orf80F5H4A9 247 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 LY6G6DO95868 133 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 HCKP08631 526 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 RPS2P15880 293 aaKnown RBP16.6■□□□□ 0.25
COL9A3-204ENST00000463487 MTCP1P56278 107 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 LMO4P61968 165 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 IL24Q13007 206 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 MLLT11Q13015 90 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-204ENST00000463487 SFRP4Q6FHJ7 346 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-204ENST00000463487 ZNF367Q7RTV3 350 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 DEFB108BQ8NET1 73 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 OR51F2Q8NH61 342 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 RGP1Q92546 391 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-204ENST00000463487 FCGR1BQ92637 280 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 TMEM246Q9BRR3 403 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 METTL17Q9H7H0 456 aaPredicted RBP16.6■□□□□ 0.25
COL9A3-204ENST00000463487 RASL12Q9NYN1 266 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 LRRC42Q9Y546 428 aa16.6■□□□□ 0.25
COL9A3-204ENST00000463487 HIVEP1P15822 2718 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 CEACAM18A8MTB9 384 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 PCMT1P22061 227 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 GLRA1P23415 457 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 TRAM1Q15629 374 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 SMIM21Q3B7S5 101 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 KCTD21Q4G0X4 260 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 ESCO2Q56NI9 601 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 FAM201AQ5SY85 155 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 TEX36Q5VZQ5 186 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 FAM166AQ6J272 317 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 OR8B3Q8NGG8 313 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 TMIGD2Q96BF3 282 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 NEIL1Q96FI4 390 aaPredicted RBP16.59■□□□□ 0.25
COL9A3-204ENST00000463487 C1orf159Q96HA4 380 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 OR8B2Q96RD0 313 aa16.59■□□□□ 0.25
COL9A3-204ENST00000463487 LRCH1Q9Y2L9 728 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms