RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 POLDIP2Q9Y2S7 368 aa12.99□□□□□ -0.33
PTPRU-204ENST00000428026 GOLT1BQ9Y3E0 138 aa12.99□□□□□ -0.33
PTPRU-204ENST00000428026 KIAA1324LA8MWY0 1029 aaPredicted RBP12.99□□□□□ -0.33
PTPRU-204ENST00000428026 H3BMH7 237 aa12.99□□□□□ -0.33
PTPRU-204ENST00000428026 MPLP40238 635 aa12.99□□□□□ -0.33
PTPRU-204ENST00000428026 RPL13AP40429 203 aaKnown RBP12.99□□□□□ -0.33
PTPRU-204ENST00000428026 INSM1Q01101 510 aaPredicted RBP12.99□□□□□ -0.33
PTPRU-204ENST00000428026 CLPPQ16740 277 aaPredicted RBP12.99□□□□□ -0.33
PTPRU-204ENST00000428026 OR2A1Q8NGT9 310 aa12.99□□□□□ -0.33
PTPRU-204ENST00000428026 HMGCLL1Q8TB92 370 aa12.99□□□□□ -0.33
PTPRU-204ENST00000428026 PRR13Q9NZ81 148 aa12.99□□□□□ -0.33
PTPRU-204ENST00000428026 M0R296 226 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 BMPR1BO00238 502 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 PLPP2O43688 288 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 CHRNA7P36544 502 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 ZNF628Q5EBL2 1059 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 B3GNTL1Q67FW5 361 aaPredicted RBP12.98□□□□□ -0.33
PTPRU-204ENST00000428026 SIGLEC7Q9Y286 467 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 VAMP5O95183 116 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 GYPAP02724 150 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 CD200P41217 278 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 OR5I1Q13606 314 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 DGAT2L6Q6ZPD8 337 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 SPICQ8N5J4 248 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 OXGR1Q96P68 337 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 NAT8BQ9UHF3 227 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 SRSF5Q13243 272 aaKnown RBP12.98□□□□□ -0.33
PTPRU-204ENST00000428026 PNLIPRP3Q17RR3 467 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 LRP11Q86VZ4 500 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 OR5C1Q8NGR4 320 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 C11orf40Q8WZ69 217 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 NOL4LQ96MY1 436 aaPredicted RBP12.98□□□□□ -0.33
PTPRU-204ENST00000428026 A0A0A6YYD5 115 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 FAM24AA6NFZ4 105 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 KLRC4-KLRK1H3BQV0 150 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 CXCL13O43927 109 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 CTAG2O75638 210 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 FGF8P55075 233 aaPredicted RBP12.98□□□□□ -0.33
PTPRU-204ENST00000428026 C1QTNF12Q5T7M4 302 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 ZNF573Q86YE8 665 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 TMEM178AQ8NBL3 297 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 NUBPLQ8TB37 319 aa12.98□□□□□ -0.33
PTPRU-204ENST00000428026 CIB3Q96Q77 187 aaPredicted RBP12.98□□□□□ -0.33
PTPRU-204ENST00000428026 SHISA8B8ZZ34 492 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 TNFSF11O14788 317 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 KRASP01116 189 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 CEACAM5P06731 702 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 YBX1P67809 324 aaKnown RBP12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ELFN2Q5R3F8 820 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 C6orf15Q6UXA7 325 aaPredicted RBP12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ZDHHC23Q8IYP9 409 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ARHGEF39Q8N4T4 335 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ZDHHC22Q8N966 263 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 TP53I13Q8NBR0 393 aaPredicted RBP12.97□□□□□ -0.33
PTPRU-204ENST00000428026 SMRP1Q8NCR6 262 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 SERPINE3A8MV23 424 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ERVS71-1P61550 626 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 PRDX4Q13162 271 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ACSM6Q6P461 480 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 OR10X1Q8NGY0 326 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ROBO4Q8WZ75 1007 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 COMMD5Q9GZQ3 224 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 BRWD1Q9NSI6 2320 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 RGS13O14921 159 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ADAM20O43506 726 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 SFT2D2O95562 160 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 IGF2P01344 180 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 LYPD8Q6UX82 237 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 SFTPA1Q8IWL2 248 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 FBXL14Q8N1E6 418 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 BVESQ8NE79 360 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ZG16BQ96DA0 208 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 THOC3Q96J01 351 aaKnown RBP12.97□□□□□ -0.33
PTPRU-204ENST00000428026 PLAC1Q9HBJ0 212 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 V9GYH0 126 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ARID1AO14497 2285 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 FOXF1Q12946 379 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 MPPED2Q15777 294 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 TMEM215Q68D42 235 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 GVQW1Q8N7I0 195 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 GPR137Q96N19 417 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 DEFB127Q9H1M4 99 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 FBXL17Q9UF56 701 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 A0A087X0M5 115 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 A0A1B0GX30 115 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 MEX3AA1L020 520 aaKnown RBP12.97□□□□□ -0.33
PTPRU-204ENST00000428026 AP4M1O00189 453 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 CST2P09228 141 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 CISD3P0C7P0 127 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 Q1RN00 199 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 DHRS7BQ6IAN0 325 aaPredicted RBP12.97□□□□□ -0.33
PTPRU-204ENST00000428026 C9orf62Q8N4C0 152 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 ACY3Q96HD9 319 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 VN1R1Q9GZP7 353 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 LOXL2Q9Y4K0 774 aa12.97□□□□□ -0.33
PTPRU-204ENST00000428026 SPTY2D1-AS1A0A0U1RR47 76 aa12.96□□□□□ -0.33
PTPRU-204ENST00000428026 COX7A2P2O60397 106 aa12.96□□□□□ -0.33
PTPRU-204ENST00000428026 TNFSF15O95150 251 aa12.96□□□□□ -0.33
PTPRU-204ENST00000428026 FMODQ06828 376 aa12.96□□□□□ -0.33
PTPRU-204ENST00000428026 EXT1Q16394 746 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms