RNA–Protein interactions for RNA: ENST00000409285.6

VSX1-203, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-203ENST00000409285 EDARQ9UNE0 448 aa17.35■□□□□ 0.37
VSX1-203ENST00000409285 IGKV1-27A0A075B6S5 117 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 TRIM64BA6NI03 449 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 PDCD5O14737 125 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 NOL3O60936 208 aaKnown RBP17.34■□□□□ 0.37
VSX1-203ENST00000409285 MPZP25189 248 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 ATP1B3P54709 279 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 KRTAP10-9P60411 292 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 VBP1P61758 197 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 ZNF154Q13106 437 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 DMRTC1Q5HYR2 192 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 FOXB2Q5VYV0 432 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 NAV2Q8IVL1 2488 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 TRMT10AQ8TBZ6 339 aaKnown RBP17.34■□□□□ 0.37
VSX1-203ENST00000409285 NPRL2Q8WTW4 380 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 NEU4Q8WWR8 484 aaPredicted RBP17.34■□□□□ 0.37
VSX1-203ENST00000409285 FOXRED1Q96CU9 486 aaPredicted RBP17.34■□□□□ 0.37
VSX1-203ENST00000409285 SORCS2Q96PQ0 1159 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 UQCC2Q9BRT2 126 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 TPK1Q9H3S4 243 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 SAP30LQ9HAJ7 183 aa17.34■□□□□ 0.37
VSX1-203ENST00000409285 PDZD2O15018 2839 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 NCR1O76036 304 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 IL1AP01583 271 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 RAB3BP20337 219 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 SDC2P34741 201 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 ZNF93P35789 620 aaPredicted RBP17.33■□□□□ 0.37
VSX1-203ENST00000409285 MTCP1P56278 107 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 LSM3P62310 102 aaKnown RBP17.33■□□□□ 0.37
VSX1-203ENST00000409285 CCL8P80075 99 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 ITLN1Q8WWA0 313 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 GFI1Q99684 422 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 VRK1Q99986 396 aaPredicted RBP17.33■□□□□ 0.37
VSX1-203ENST00000409285 PKIBQ9C010 78 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 DECR2Q9NUI1 292 aa17.33■□□□□ 0.37
VSX1-203ENST00000409285 ZNF701Q9NV72 531 aaPredicted RBP17.33■□□□□ 0.37
VSX1-203ENST00000409285 FAM230AA0A1W2PPH8 454 aa17.32■□□□□ 0.36
VSX1-203ENST00000409285 H3BMQ9 156 aa17.32■□□□□ 0.36
VSX1-203ENST00000409285 MRPS11P82912 194 aaKnown RBP17.32■□□□□ 0.36
VSX1-203ENST00000409285 RIN1Q13671 783 aa17.32■□□□□ 0.36
VSX1-203ENST00000409285 GLT8D1Q68CQ7 371 aa17.32■□□□□ 0.36
VSX1-203ENST00000409285 USP43Q70EL4 1123 aa17.32■□□□□ 0.36
VSX1-203ENST00000409285 Q8TCH9 128 aa17.32■□□□□ 0.36
VSX1-203ENST00000409285 LIME1Q9H400 295 aa17.32■□□□□ 0.36
VSX1-203ENST00000409285 RSL24D1Q9UHA3 163 aaKnown RBP17.32■□□□□ 0.36
VSX1-203ENST00000409285 J3QT63 122 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 TGFBR1P36897 503 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 CFHR2P36980 270 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 CDKN1AP38936 164 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 HAAOP46952 286 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 ZP1P60852 638 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 ZNF181Q2M3W8 571 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 SPRNQ5BIV9 151 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 CALHM1Q8IU99 346 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 SCCPDHQ8NBX0 429 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 GCM1Q9NP62 436 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 V9GY05 133 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 VPS13CQ709C8 3753 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 A0A0G2JK05 382 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 CYSRT1A8MQ03 144 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 IFNL4K9M1U5 179 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 TMEM127O75204 238 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 ACAA1P09110 424 aaPredicted RBP17.31■□□□□ 0.36
VSX1-203ENST00000409285 IL24Q13007 206 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 MPPED2Q15777 294 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 C1orf100Q5SVJ3 147 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 FAM166AQ6J272 317 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 NR2C2APQ86WQ0 139 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 C11orf53Q8IXP5 236 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 SAXO1Q8IYX7 474 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 PNLDC1Q8NA58 520 aaKnown RBP17.31■□□□□ 0.36
VSX1-203ENST00000409285 ZSCAN4Q8NAM6 433 aaPredicted RBP17.31■□□□□ 0.36
VSX1-203ENST00000409285 C12orf43Q96C57 262 aaKnown RBP17.31■□□□□ 0.36
VSX1-203ENST00000409285 DGCR14Q96DF8 476 aaKnown RBP17.31■□□□□ 0.36
VSX1-203ENST00000409285 SPACA5Q96QH8 159 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 FN3KRPQ9HA64 309 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 POLDIP2Q9Y2S7 368 aa17.31■□□□□ 0.36
VSX1-203ENST00000409285 AK6Q9Y3D8 172 aaKnown RBP17.31■□□□□ 0.36
VSX1-203ENST00000409285 NOTOA8MTQ0 251 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 SLC17A2O00624 439 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 CDRT1O95170 752 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 HPXP02790 462 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 RANBP1P43487 201 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 SERPINB10P48595 397 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 EFNA4P52798 201 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 PDZK1IP1Q13113 114 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 PRAMEF6Q5VXH4 476 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 HAGHLQ6PII5 290 aaPredicted RBP17.3■□□□□ 0.36
VSX1-203ENST00000409285 RNF144BQ7Z419 303 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 CROCCP3Q8IVE0 287 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 JAGN1Q8N5M9 183 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 PXT1Q8NFP0 134 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 OR6M1Q8NGM8 313 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 NDNFQ8TB73 568 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 AQP3Q92482 292 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 NRGNQ92686 78 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 NINJ1Q92982 152 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 DCSTAMPQ9H295 470 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 PPP1R3CQ9UQK1 317 aa17.3■□□□□ 0.36
VSX1-203ENST00000409285 IFITM5A6NNB3 132 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms