RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PDCD1LG2Q9BQ51 273 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 NXF2Q9GZY0 626 aaKnown RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 FAM234AQ9H0X4 552 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 TMEM106BQ9NUM4 274 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 DHDHQ9UQ10 334 aa5.89□□□□□ -1.47
LIMA1-202ENST00000394943 UTP20O75691 2785 aaKnown RBP5.89□□□□□ -1.47
LIMA1-202ENST00000394943 GPR37O15354 613 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 FCN3O75636 299 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 FSHBP01225 129 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 ERCC1P07992 297 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-202ENST00000394943 SLC6A9P48067 706 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 TNFAIP6P98066 277 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-202ENST00000394943 OR8G1Q15617 311 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 SRSF7Q16629 238 aaKnown RBP eCLIP5.88□□□□□ -1.47
LIMA1-202ENST00000394943 SPIN3Q5JUX0 258 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 SCCPDHQ8NBX0 429 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF420Q8TAQ5 688 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-202ENST00000394943 OR2V2Q96R30 315 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 TMEM138Q9NPI0 162 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 PSMD9O00233 223 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 UBBP0CG47 229 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 DAOP14920 347 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 AZGP1P25311 298 aaKnown RBP5.88□□□□□ -1.47
LIMA1-202ENST00000394943 ERP29P30040 261 aaKnown RBP5.88□□□□□ -1.47
LIMA1-202ENST00000394943 NPY4RP50391 375 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 LMO4P61968 165 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 PDZK1IP1Q13113 114 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 CTF1Q16619 201 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 ACSM3Q53FZ2 586 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 MUC20Q8N307 709 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-202ENST00000394943 KIR3DL3Q8N743 410 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 OR13C3Q8NGS6 347 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 PPP1R3EQ9H7J1 279 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 TREM2Q9NZC2 230 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 DYSFO75923 2080 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF469Q96JG9 3925 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-202ENST00000394943 TRAV8-7A0A075B6U6 113 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 SHISA3A0PJX4 238 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 TMEM14DPA8MWL7 114 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 PTGES3LE9PB15 166 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 TBX1O43435 398 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 IGHV2-5P01817 119 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 FAHP16930 419 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 RAB6AP20340 208 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 COL8A2P25067 703 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 MNDAP41218 407 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 TMBIM6P55061 237 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 SPATA46Q5T0L3 261 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 TGIF2LYQ8IUE0 185 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 CROCCP3Q8IVE0 287 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 ITLN1Q8WWA0 313 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 NEK6Q9HC98 313 aa5.88□□□□□ -1.47
LIMA1-202ENST00000394943 TXNL4BQ9NX01 149 aaKnown RBP5.88□□□□□ -1.47
LIMA1-202ENST00000394943 DSCAMO60469 2012 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 TRBV6-6A0A0A6YYG2 114 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF850A8MQ14 1090 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 CA11O75493 328 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 RBP4P02753 201 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 SRMP19623 302 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 RAB3AP20336 220 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 CA6P23280 308 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 Q6P435 159 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ACP7Q6ZNF0 438 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF788Q6ZQV5 615 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 DCDC5Q6ZRR9 648 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-202ENST00000394943 CALHM1Q8IU99 346 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ZNF676Q8N7Q3 588 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 FGGYQ96C11 551 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 RNF7Q9UBF6 113 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 LAMP3Q9UQV4 416 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 POLDIP2Q9Y2S7 368 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ANKHD1Q8IWZ3 2542 aaKnown RBP5.87□□□□□ -1.47
LIMA1-202ENST00000394943 VPS13CQ709C8 3753 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 IGKV1-12A0A0C4DH73 117 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 CYSRT1A8MQ03 144 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 LGALS8O00214 317 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ARL6IP5O75915 188 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 IL1AP01583 271 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 IGKV1D-12P01611 117 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 BDKRB2P30411 391 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 RBP2P50120 134 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 PSMD7P51665 324 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 CAV3P56539 151 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 LY6G6FQ5SQ64 297 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ANGPTL6Q8NI99 470 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 CORO2AQ92828 525 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 SAP30LQ9HAJ7 183 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 POU2F3Q9UKI9 436 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 A0A1W2PPW3 197 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 PLSCR5A0PG75 271 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 F5H5P2 479 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 RPP14O95059 124 aaKnown RBP5.87□□□□□ -1.47
LIMA1-202ENST00000394943 BPNT1O95861 308 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 WNT2P09544 360 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 CELP19835 753 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 CCNOP22674 350 aa5.87□□□□□ -1.47
LIMA1-202ENST00000394943 MDH2P40926 338 aaKnown RBP5.87□□□□□ -1.47
LIMA1-202ENST00000394943 RPL5P46777 297 aaKnown RBP5.87□□□□□ -1.47
LIMA1-202ENST00000394943 ATP1B3P54709 279 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms