RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 GPM6AP51674 278 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 CAV3P56539 151 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 RPL13AP3Q6NVV1 102 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 ZNF782Q6ZMW2 699 aaPredicted RBP12.18□□□□□ -0.46
SYNE2-228ENST00000639659 TMEM219Q86XT9 240 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 NDUFA11Q86Y39 141 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 DDOQ99489 341 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 TSSK6Q9BXA6 273 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 YY1AP1Q9H869 796 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 ZNF702PQ9H963 129 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 SPAG4Q9NPE6 437 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 C19orf12Q9NSK7 152 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 ZNF319Q9P2F9 582 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 ABCD2Q9UBJ2 740 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 MPC1Q9Y5U8 109 aa12.18□□□□□ -0.46
SYNE2-228ENST00000639659 RHBDL1O75783 438 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 SOX14O95416 240 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 APOC1P02654 83 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 H2BFMP0C1H6 154 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 VSIG8P0DPA2 414 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 MSX2P35548 267 aaPredicted RBP12.17□□□□□ -0.46
SYNE2-228ENST00000639659 RAB13P51153 203 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 SNCBQ16143 134 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 DMRTC1Q5HYR2 192 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 CRIP3Q6Q6R5 217 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 HACD2Q6Y1H2 254 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 ZDHHC23Q8IYP9 409 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 PAPD5Q8NDF8 572 aaKnown RBP12.17□□□□□ -0.46
SYNE2-228ENST00000639659 OR52H1Q8NGJ2 320 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 FAM81AQ8TBF8 368 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 OR5P3Q8WZ94 311 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 AJUBAQ96IF1 538 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 HIST1H2AAQ96QV6 131 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 INTS14Q96SY0 518 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 ABHD6Q9BV23 337 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 FGF23Q9GZV9 251 aaPredicted RBP12.17□□□□□ -0.46
SYNE2-228ENST00000639659 MEGF9Q9H1U4 602 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 MED20Q9H944 212 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 ABCB10Q9NRK6 738 aa12.17□□□□□ -0.46
SYNE2-228ENST00000639659 IGKV1D-17A0A075B6S4 117 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 TRBV23-1A0A0A0MS06 115 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 CCDC22O60826 627 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 SEMG1P04279 462 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 PSG2P11465 335 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 CCL3L1P16619 93 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 ACKR3P25106 362 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 ERVFRD-1P60508 538 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 TMEM95Q3KNT9 176 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 DEFB121Q5J5C9 76 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 CEP78Q5JTW2 689 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 LIAT1Q6ZQX7 453 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 LHFPL4Q7Z7J7 247 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.16□□□□□ -0.46
SYNE2-228ENST00000639659 DTX3Q8N9I9 347 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 OR4M1Q8NGD0 313 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 HPSE2Q8WWQ2 592 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 AMELYQ99218 206 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 BTBD10Q9BSF8 475 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 HEXA-AS1Q9H8Q6 139 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 SERTAD4Q9NUC0 356 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 ARMC1Q9NVT9 282 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 TAS2R1Q9NYW7 299 aa12.16□□□□□ -0.46
SYNE2-228ENST00000639659 FAM183AA6NL82 134 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 RIIAD1A6NNX1 92 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 ZNF732B4DXR9 585 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 TNFRSF11BO00300 401 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 GLCEO94923 617 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 IFNGP01579 166 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 PF4V1P10720 104 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 PIPP12273 146 aaPredicted RBP12.15□□□□□ -0.46
SYNE2-228ENST00000639659 PAICSP22234 425 aaKnown RBP12.15□□□□□ -0.46
SYNE2-228ENST00000639659 CEBPDP49716 269 aaPredicted RBP12.15□□□□□ -0.46
SYNE2-228ENST00000639659 RPL31P62899 125 aaKnown RBP12.15□□□□□ -0.46
SYNE2-228ENST00000639659 PPP1R8Q12972 351 aaKnown RBP12.15□□□□□ -0.46
SYNE2-228ENST00000639659 TEX30Q5JUR7 227 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 PRSS45Q7RTY3 260 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 THAP5Q7Z6K1 395 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 COMMD2Q86X83 199 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 BATF2Q8N1L9 274 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 OR4Q3Q8NH05 313 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 RNF133Q8WVZ7 376 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 NSMCE2Q96MF7 247 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 C1orf21Q9H246 121 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 ABCB9Q9NP78 766 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 CD300AQ9UGN4 299 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 MAGEL2Q9UJ55 1249 aa12.15□□□□□ -0.46
SYNE2-228ENST00000639659 A0A1W2PPH5 198 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 MEX3AA1L020 520 aaKnown RBP12.14□□□□□ -0.47
SYNE2-228ENST00000639659 ZNF3P17036 446 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 GSTT1P30711 240 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 OPRL1P41146 370 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 VDAC2P45880 294 aaPredicted RBP12.14□□□□□ -0.47
SYNE2-228ENST00000639659 SLC25A1P53007 311 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 CNN3Q15417 329 aaKnown RBP12.14□□□□□ -0.47
SYNE2-228ENST00000639659 AANATQ16613 207 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 SAMD4BQ5PRF9 694 aaKnown RBP12.14□□□□□ -0.47
SYNE2-228ENST00000639659 RASSF6Q6ZTQ3 369 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 DYNAPQ8N1N2 210 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 AQP11Q8NBQ7 271 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 OR2T33Q8NG76 320 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms