RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RAB18Q9NP72 206 aa15.78■□□□□ 0.12
CLN3-262ENST00000637699 TBC1D23Q9NUY8 699 aa15.78■□□□□ 0.12
CLN3-262ENST00000637699 IL20Q9NYY1 176 aa15.78■□□□□ 0.12
CLN3-262ENST00000637699 MPC1Q9Y5U8 109 aa15.78■□□□□ 0.12
CLN3-262ENST00000637699 OR2AT4A6NND4 320 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 APOC1P02654 83 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 C16orf89Q6UX73 402 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 FAM185AQ8N0U4 392 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 FTMTQ8N4E7 242 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 ZNRF1Q8ND25 227 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 OR5P3Q8WZ94 311 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 RNF170Q96K19 258 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 TSSK6Q9BXA6 273 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 NMNAT2Q9BZQ4 307 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 NPFFR1Q9GZQ6 430 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 NECAP2Q9NVZ3 263 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 NLKQ9UBE8 527 aa15.77■□□□□ 0.12
CLN3-262ENST00000637699 TMEM210A6NLX4 147 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 XPNPEP2O43895 674 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 CHST1O43916 411 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 GLRA1P23415 457 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 SLC25A1P53007 311 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 SNCBQ16143 134 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 ERI1Q8IV48 349 aaKnown RBP15.76■□□□□ 0.11
CLN3-262ENST00000637699 TIGD4Q8IY51 512 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 TMEM185AQ8NFB2 350 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 OR4S1Q8NGB4 309 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 OR6N2Q8NGY6 317 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 OR4Q3Q8NH05 313 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 RNF133Q8WVZ7 376 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 PIGCQ92535 297 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 AMELYQ99218 206 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 BTBD10Q9BSF8 475 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 FGF23Q9GZV9 251 aaPredicted RBP15.76■□□□□ 0.11
CLN3-262ENST00000637699 MMP28Q9H239 520 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 IL1RAPQ9NPH3 570 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 AURKAIP1Q9NWT8 199 aaPredicted RBP15.76■□□□□ 0.11
CLN3-262ENST00000637699 NDE1Q9NXR1 346 aa15.76■□□□□ 0.11
CLN3-262ENST00000637699 IGKV1D-17A0A075B6S4 117 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 B2RBV5 119 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 DYNC1I1O14576 645 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 FBXO24O75426 580 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 GASTP01350 101 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 CD28P10747 220 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 ACKR3P25106 362 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 BMXP51813 675 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 HABP2Q14520 560 aaPredicted RBP15.75■□□□□ 0.11
CLN3-262ENST00000637699 SPATS1Q496A3 300 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 RASSF6Q6ZTQ3 369 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 MKXQ8IYA7 352 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 R3HDM4Q96D70 268 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 NSL1Q96IY1 281 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 INTS14Q96SY0 518 aa15.75■□□□□ 0.11
CLN3-262ENST00000637699 MEGF11A6BM72 1044 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 TNFRSF11BO00300 401 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 RHBDL1O75783 438 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 FAM107AO95990 144 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 CST4P01036 141 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 H2BFMP0C1H6 154 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 PSG2P11465 335 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 DCTDP32321 178 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 MNAT1P51948 309 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 CAPZA1P52907 286 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 BLVRAP53004 296 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 EMX1Q04741 257 aaPredicted RBP15.74■□□□□ 0.11
CLN3-262ENST00000637699 AANATQ16613 207 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 FAM76BQ5HYJ3 339 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 ZBTB37Q5TC79 503 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 LINC01590Q5TEZ4 76 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 CYP2R1Q6VVX0 501 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 PIFOQ8TCI5 191 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 HPSE2Q8WWQ2 592 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 RGCCQ9H4X1 137 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 MED20Q9H944 212 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 ABCB9Q9NP78 766 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 C19orf12Q9NSK7 152 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 LYVE1Q9Y5Y7 322 aa15.74■□□□□ 0.11
CLN3-262ENST00000637699 TRBV23-1A0A0A0MS06 115 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 KRT36O76013 467 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 SOX14O95416 240 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 T-ENOLP0DO92 83 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 ATP6V1B2P21281 511 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 OPRL1P41146 370 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 GPM6AP51674 278 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 HMGA2P52926 109 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 ZDHHC23Q8IYP9 409 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 LINC00471Q8N535 108 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 DTX3Q8N9I9 347 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 OR2T33Q8NG76 320 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 PHF21AQ96BD5 680 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 OTULINQ96BN8 352 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 LYZL4Q96KX0 146 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 HIST1H2AAQ96QV6 131 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 YY1AP1Q9H869 796 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 ZNF702PQ9H963 129 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 SERTAD4Q9NUC0 356 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 ARMC1Q9NVT9 282 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 ACTR3BQ9P1U1 418 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 BAIAP2Q9UQB8 552 aa15.73■□□□□ 0.11
CLN3-262ENST00000637699 FAM183AA6NL82 134 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms