RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 OR51A2Q8NGJ7 313 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 ZNF420Q8TAQ5 688 aaPredicted RBP12.19□□□□□ -0.46
UPF1-211ENST00000600868 RAB2BQ8WUD1 216 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 RNF170Q96K19 258 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 RTL8AQ9BWD3 113 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 CACNG6Q9BXT2 260 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 FGF23Q9GZV9 251 aaPredicted RBP12.19□□□□□ -0.46
UPF1-211ENST00000600868 SLITRK2Q9H156 845 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 C14orf119Q9NWQ9 140 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 IL19Q9UHD0 177 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 CEPT1Q9Y6K0 416 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 DSCAMO60469 2012 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 CELSR2Q9HCU4 2923 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 TMEM210A6NLX4 147 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 F5H5P2 479 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 MAGEB3O15480 346 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 OCMP0CE72 109 aaPredicted RBP12.18□□□□□ -0.46
UPF1-211ENST00000600868 THBS2P35442 1172 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 MTNR1BP49286 362 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 SRP9P49458 86 aaKnown RBP12.18□□□□□ -0.46
UPF1-211ENST00000600868 GPM6AP51674 278 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 TNFAIP6P98066 277 aaPredicted RBP12.18□□□□□ -0.46
UPF1-211ENST00000600868 MAB21L1Q13394 359 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 DMRTC1Q5HYR2 192 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 LHFPL2Q6ZUX7 228 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 CDH26Q8IXH8 852 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 ZCCHC24Q8N2G6 241 aaKnown RBP12.18□□□□□ -0.46
UPF1-211ENST00000600868 NKAIN3Q8N8D7 197 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 MEGF10Q96KG7 1140 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 OR2V2Q96R30 315 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 CCL19Q99731 98 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 EGLN1Q9GZT9 426 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 RAB1BQ9H0U4 201 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 RNF167Q9H6Y7 350 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 NDUFA13Q9P0J0 144 aa12.18□□□□□ -0.46
UPF1-211ENST00000600868 LOC100289279A0A1B0GTE1 492 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 SMIM31A0A1B0GVY4 71 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 SHISA3A0PJX4 238 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 DPPA5A6NC42 116 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 ZNF732B4DXR9 585 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 PDCD5O14737 125 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 MAS1P04201 325 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 HCKP08631 526 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 CD37P11049 281 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 ADRA2CP18825 462 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 GATA4P43694 442 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 RBP2P50120 134 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 PSMD7P51665 324 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 ATP1B3P54709 279 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 KRTAP10-9P60411 292 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 NCS1P62166 190 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 LSM3P62310 102 aaKnown RBP12.17□□□□□ -0.46
UPF1-211ENST00000600868 TESK1Q15569 626 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 TPRA1Q86W33 373 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 ZNF573Q86YE8 665 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 OR52N4Q8NGI2 321 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 TRMT10AQ8TBZ6 339 aaKnown RBP12.17□□□□□ -0.46
UPF1-211ENST00000600868 NPRL2Q8WTW4 380 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 BORCS8Q96FH0 119 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 CPNE2Q96FN4 548 aaPredicted RBP12.17□□□□□ -0.46
UPF1-211ENST00000600868 VRK1Q99986 396 aaPredicted RBP12.17□□□□□ -0.46
UPF1-211ENST00000600868 RBM38Q9H0Z9 239 aaKnown RBP12.17□□□□□ -0.46
UPF1-211ENST00000600868 TPK1Q9H3S4 243 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 LIME1Q9H400 295 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 CXorf56Q9H5V9 222 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 EDARQ9UNE0 448 aa12.17□□□□□ -0.46
UPF1-211ENST00000600868 CENPEQ02224 2701 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 IGKV1-27A0A075B6S5 117 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 FAM230AA0A1W2PPH8 454 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 LRP5LA4QPB2 252 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 TRIM64BA6NI03 449 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 ZNF701M0R085 212 aaPredicted RBP12.16□□□□□ -0.46
UPF1-211ENST00000600868 NOL3O60936 208 aaKnown RBP12.16□□□□□ -0.46
UPF1-211ENST00000600868 TNFRSF1AP19438 455 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 SDC2P34741 201 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 MTCP1P56278 107 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 VBP1P61758 197 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 CCL8P80075 99 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 KISS1Q15726 138 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 DDI2Q5TDH0 399 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 CRIP3Q6Q6R5 217 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 WDR86Q86TI4 376 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 LYPD6Q86Y78 171 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 ITLN1Q8WWA0 313 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 NEU4Q8WWR8 484 aaPredicted RBP12.16□□□□□ -0.46
UPF1-211ENST00000600868 ERGIC1Q969X5 290 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 ISOC1Q96CN7 298 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 FOXRED1Q96CU9 486 aaPredicted RBP12.16□□□□□ -0.46
UPF1-211ENST00000600868 SORCS2Q96PQ0 1159 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 TLNRD1Q9H1K6 362 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 OR51I2Q9H344 312 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 DECR2Q9NUI1 292 aa12.16□□□□□ -0.46
UPF1-211ENST00000600868 FBN2P35556 2912 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 SLC22A1O15245 554 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 NCR1O76036 304 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 GRPP07492 148 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 PAX1P15863 534 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 ZNF93P35789 620 aaPredicted RBP12.15□□□□□ -0.46
UPF1-211ENST00000600868 TGFBR1P36897 503 aa12.15□□□□□ -0.46
UPF1-211ENST00000600868 ZNF154Q13106 437 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms