RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	NMB	P08949	121 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	PRPS2	P11908	318 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	MLN	P12872	115 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	CBR1	P16152	277 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	ADORA1	P30542	326 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	LCN1	P31025	176 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	NAA10	P41227	235 aa	Predicted RBP	3.91	□□□□□ -1.78
SS18-223	ENST00000583595	NSG1	P42857	185 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	MAGEA2	P43356	314 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	MAGEA6	P43360	314 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	MAGEA12	P43365	314 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	GCLM	P48507	274 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	RORC	P51449	518 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	SKP1	P63208	163 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	C2orf80	Q0P641	193 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	BIK	Q13323	160 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	FCN2	Q15485	313 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	TOMM34	Q15785	309 aa	Predicted RBP	3.91	□□□□□ -1.78
SS18-223	ENST00000583595	ZNF79	Q15937	498 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	C17orf58	Q2M2W7	97 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	EIPR1	Q53HC9	387 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	TFDP3	Q5H9I0	405 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	BEX5	Q5H9J7	111 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	OR2G6	Q5TZ20	316 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	C9orf135	Q5VTT2	229 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	MLIP	Q5VWP3	458 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	TRIQK	Q629K1	86 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	STEAP4	Q687X5	459 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	FRMPD2B	Q6IN97	320 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	DCUN1D3	Q8IWE4	304 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	ZNF100	Q8IYN0	542 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	SVBP	Q8N300	66 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	FAM86B1	Q8N7N1	296 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	OR5T3	Q8NGG3	340 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	OR56B4	Q8NH76	319 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	SPATA3	Q8NHX4	192 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	ZNF596	Q8TC21	504 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	GPR151	Q8TDV0	419 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	MAFIP	Q8WZ33	124 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	TAF15	Q92804	592 aa	Known RBP eCLIP	3.91	□□□□□ -1.78
SS18-223	ENST00000583595	FGF11	Q92914	225 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	ZBED3	Q96IU2	234 aa	Predicted RBP	3.91	□□□□□ -1.78
SS18-223	ENST00000583595	OR2M2	Q96R28	347 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	F2RL3	Q96RI0	385 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	EBNA1BP2	Q99848	306 aa	Known RBP	3.91	□□□□□ -1.78
SS18-223	ENST00000583595	KCNS3	Q9BQ31	491 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	CMSS1	Q9BQ75	279 aa	Known RBP	3.91	□□□□□ -1.78
SS18-223	ENST00000583595	FGFBP2	Q9BYJ0	223 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	RNF122	Q9H9V4	155 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	SDF2L1	Q9HCN8	221 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	FGF20	Q9NP95	211 aa	Predicted RBP	3.91	□□□□□ -1.78
SS18-223	ENST00000583595	MYOZ2	Q9NPC6	264 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	ASCL3	Q9NQ33	180 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	NANS	Q9NR45	359 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	DMAC2	Q9NW81	257 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	RBAK	Q9NYW8	714 aa	Predicted RBP	3.91	□□□□□ -1.78
SS18-223	ENST00000583595	PAK5	Q9P286	719 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	ZNF222	Q9UK12	451 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	SAMD4A	Q9UPU9	718 aa	Known RBP	3.91	□□□□□ -1.78
SS18-223	ENST00000583595	DICER1	Q9UPY3	1922 aa	Known RBP	3.91	□□□□□ -1.78
SS18-223	ENST00000583595	ARFGEF2	Q9Y6D5	1785 aa		3.91	□□□□□ -1.78
SS18-223	ENST00000583595	DUOX1	Q9NRD9	1551 aa		3.9	□□□□□ -1.78
SS18-223	ENST00000583595	IGHV3OR16-12	A0A075B7B8	117 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	MEIKIN	A0A087WXM9	373 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595		A0A0J9YYE9	177 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	MEX3A	A1L020	520 aa	Known RBP	3.9	□□□□□ -1.79
SS18-223	ENST00000583595	FABP12	A6NFH5	140 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	OR5B21	A6NL26	309 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	ZNF705E	A8MWA4	302 aa	Predicted RBP	3.9	□□□□□ -1.79
SS18-223	ENST00000583595		G3V3Y1	287 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	NTN3	O00634	580 aa	Predicted RBP	3.9	□□□□□ -1.79
SS18-223	ENST00000583595	ITGB1BP1	O14713	200 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	SIVA1	O15304	175 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	LYRM1	O43325	122 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	FADS1	O60427	444 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	TRBC1	P01850	177 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	AMBP	P02760	352 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	LGALS2	P05162	132 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	CRYBA1	P05813	215 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	CD55	P08174	381 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	SNRPC	P09234	159 aa	Known RBP	3.9	□□□□□ -1.79
SS18-223	ENST00000583595	TSPAN19	P0C672	248 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	IGFBP5	P24593	272 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	G0S2	P27469	103 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	FMO3	P31513	532 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	CDKN2B	P42772	138 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	RGR	P47804	291 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	OMP	P47874	163 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	GSK3B	P49841	420 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	RAB5C	P51148	216 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	HMGCS2	P54868	508 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	ERVPABLB-1	P60509	514 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	RAB10	P61026	200 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	PKIA	P61925	76 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	DCD	P81605	110 aa	Known RBP	3.9	□□□□□ -1.79
SS18-223	ENST00000583595	MRPS11	P82912	194 aa	Known RBP	3.9	□□□□□ -1.79
SS18-223	ENST00000583595	HOXC5	Q00444	222 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	CHRNB3	Q05901	458 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	CYP24A1	Q07973	514 aa		3.9	□□□□□ -1.79
SS18-223	ENST00000583595	SLA	Q13239	276 aa		3.9	□□□□□ -1.79

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