RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 MIOXQ9UGB7 285 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 OR12D3Q9UGF7 316 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF490Q9ULM2 529 aaPredicted RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 DUSP12Q9UNI6 340 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SSR3Q9UNL2 185 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF835Q9Y2P0 537 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 CHTOPQ9Y3Y2 248 aaKnown RBP2.19□□□□□ -2.06
VPS13C-208ENST00000559119 CDK5RAP2Q96SN8 1893 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 KIAA1551Q9HCM1 1747 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 SIPA1L1O43166 1804 aa2.19□□□□□ -2.06
VPS13C-208ENST00000559119 RGPD2P0DJD1 1756 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 KCPQ6ZWJ8 1503 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 DOT1LQ8TEK3 1739 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 IGHV1OR15-1A0A075B7D0 117 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 LOC100506127A0A0U1RQW1 187 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM218A2RU14 115 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 FAM74A7A6NL05 159 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 HMSDA8MTL9 139 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 G3V3Q6 166 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 H0YCG3 227 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 DFFAO00273 331 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 GNGT2O14610 69 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 GPR171O14626 319 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 MED7O43513 233 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 CHMP2AO43633 222 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 EFNA2O43921 213 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 MPZL2O60487 215 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 HPGDSO60760 199 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 SCGB2A1O75556 95 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 POP7O75817 140 aaKnown RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 ATG12O94817 140 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 OR2A4O95047 310 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 SYNGR4O95473 234 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 SLC25A27O95847 323 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 SERPINA1P01009 418 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 APOC3P02656 99 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 CSF2P04141 144 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 GP1BAP07359 652 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 TSPAN19P0C672 248 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF806P0C7X5 589 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 SLC35E2BP0CK96 405 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 RNH1P13489 461 aaKnown RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 MUC1P15941 1255 aaPredicted RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 CBR1P16152 277 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 NCK1P16333 377 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 TNNI1P19237 187 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 RAB3BP20337 219 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 PVALBP20472 110 aaPredicted RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 GALP22466 123 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 NFYAP23511 347 aaPredicted RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 PSMA1P25786 263 aaKnown RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 CRABP1P29762 137 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 MIPP30301 263 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 LCN1P31025 176 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 HOXA9P31269 272 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 FGF9P31371 208 aaPredicted RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 GGT2P36268 569 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 ACAA2P42765 397 aaKnown RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 CRYBB2P43320 205 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 HTR5AP47898 357 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 EVX1P49640 407 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 CSNK1EP49674 416 aaKnown RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 RBP2P50120 134 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 HNMTP50135 292 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 DAPP51397 102 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 CCR6P51684 374 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 ACLYP53396 1101 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 CDH6P55285 790 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 ARPP19P56211 112 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 OR4D2P58180 307 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 C1QTNF8P60827 252 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 RAB5BP61020 215 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 RAB10P61026 200 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 DYNLT1P63172 113 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 MRPS11P82912 194 aaKnown RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 HOXC5Q00444 222 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 MADCAM1Q13477 382 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 COTL1Q14019 142 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 FAM83EQ2M2I3 478 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 FAM74A3Q4VXF1 159 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 PYDC2Q56P42 97 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 FBXO48Q5FWF7 155 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 SAPCD1Q5SSQ6 148 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF678Q5SXM1 525 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 THEM4Q5T1C6 240 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 GPRC6AQ5T6X5 926 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 RIPPLY2Q5TAB7 128 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 TRIQKQ629K1 86 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 RPL13AP3Q6NVV1 102 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 HAGHLQ6PII5 290 aaPredicted RBP2.18□□□□□ -2.06
VPS13C-208ENST00000559119 SPESP1Q6UW49 350 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 WASH2PQ6VEQ5 465 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 NPSR1Q6W5P4 371 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF836Q6ZNA1 936 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 RNF165Q6ZSG1 346 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 SSX9Q7RTT3 188 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 FAM122BQ7Z309 247 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 CMC1Q7Z7K0 106 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 CYP4Z1Q86W10 505 aa2.18□□□□□ -2.06
VPS13C-208ENST00000559119 PAQR7Q86WK9 346 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms