RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 SNAP29O95721 258 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 CTSLP07711 333 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 HTR1DP28221 377 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 TALDO1P37837 337 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 VEGFCP49767 419 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 SYNJ2BPP57105 145 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 OR12D2P58182 307 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 TRIP13Q15645 432 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 ZNHIT3Q15649 155 aaPredicted RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 IL17AQ16552 155 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 PRSS8Q16651 343 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 CCDC14Q49A88 953 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 ORMDL2Q53FV1 153 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 PTRHD1Q6GMV3 140 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 SLC7A5P1Q8MH63 180 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 OR2L5Q8NG80 312 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 OR2AE1Q8NHA4 323 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 ZFAND1Q8TCF1 268 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 PHF10Q8WUB8 498 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 TMEM159Q96B96 161 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 TM4SF18Q96CE8 201 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 TEAD3Q99594 435 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 SULT4A1Q9BR01 284 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 PARP12Q9H0J9 701 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 PRORYQ9H606 182 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 RBFOX1Q9NWB1 397 aaKnown RBP3.29□□□□□ -1.88
VPS13A-212ENST00000493341 DDIT4Q9NX09 232 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 SCN2AQ99250 2005 aa3.29□□□□□ -1.88
VPS13A-212ENST00000493341 ARHGAP5Q13017 1502 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 RIMS1Q86UR5 1692 aaKnown RBP3.28□□□□□ -1.88
VPS13A-212ENST00000493341 ADGBQ8N7X0 1667 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 PLXNC1O60486 1568 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 MTCL1Q9Y4B5 1905 aaKnown RBP3.28□□□□□ -1.88
VPS13A-212ENST00000493341 PLEKHH2Q8IVE3 1493 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 PALLDQ8WX93 1383 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 SUPT6HQ7KZ85 1726 aaKnown RBP3.28□□□□□ -1.88
VPS13A-212ENST00000493341 IGHV3-74A0A0B4J1X5 117 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 J3QT63 122 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 MYL12BO14950 172 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 HDAC3O15379 428 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 MYO1DO94832 1006 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 TCN2P20062 427 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 SSTR5P35346 364 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 AQP5P55064 265 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 SNRNP35Q16560 246 aaKnown RBP3.28□□□□□ -1.88
VPS13A-212ENST00000493341 STEAP4Q687X5 459 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 CEMP1Q6PRD7 247 aaPredicted RBP3.28□□□□□ -1.88
VPS13A-212ENST00000493341 RORBQ92753 470 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 SAV1Q9H4B6 383 aaPredicted RBP3.28□□□□□ -1.88
VPS13A-212ENST00000493341 WDR54Q9H977 334 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 TNFRSF19Q9NS68 423 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 IMP3Q9NV31 184 aaKnown RBP3.28□□□□□ -1.88
VPS13A-212ENST00000493341 TP53TG5Q9Y2B4 290 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 HES2Q9Y543 173 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 CEP162Q5TB80 1403 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 C9orf84Q5VXU9 1444 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 KIAA1107Q9UPP5 1409 aa3.28□□□□□ -1.88
VPS13A-212ENST00000493341 FAM135AQ9P2D6 1515 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 GPATCH8Q9UKJ3 1502 aaKnown RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 A0A1B0GTI1 187 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 A6NDX4 124 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 INS-IGF2F8WCM5 200 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 COCHO43405 550 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 CA11O75493 328 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 BCHEP06276 602 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 MMP7P09237 267 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 OMGP23515 440 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 CDC34P49427 236 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 CRISP3P54108 245 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 OR10J3Q5JRS4 329 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 SYT6Q5T7P8 510 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ZNF774Q6NX45 483 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 C6orf120Q7Z4R8 191 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 MRPL52Q86TS9 123 aaKnown RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 BBS7Q8IWZ6 715 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 LGI3Q8N145 548 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 Q8N9W7 124 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 NT5CQ8TCD5 201 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 PIFOQ8TCI5 191 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ZMYND19Q96E35 227 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 PAIP2Q9BPZ3 127 aaKnown RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 DSN1Q9H410 356 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ASCL3Q9NQ33 180 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 PPIL1Q9Y3C6 166 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ORC6Q9Y5N6 252 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 PREX1Q8TCU6 1659 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 SCAPERQ9BY12 1400 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ARHGEF5Q12774 1597 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ZNF318Q5VUA4 2279 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 PTPRMP28827 1452 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 TRAV19A0A0A6YYK7 116 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 KLRC4-KLRK1H3BQV0 150 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 SS18L1O75177 396 aaPredicted RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 MT3P25713 68 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 UBE2AP49459 152 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 PPOXP50336 477 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ZNF136P52737 540 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 RPL23P62829 140 aaKnown RBP3.27□□□□□ -1.89
VPS13A-212ENST00000493341 PITPNAQ00169 270 aa3.27□□□□□ -1.89
VPS13A-212ENST00000493341 ERCC8Q13216 396 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms