RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 PPP3R1P63098 170 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 GNG3P63215 75 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 CNN3Q15417 329 aaKnown RBP8.73□□□□□ -1.01
SKA1-204ENST00000488454 HFEQ30201 348 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 ACSM3Q53FZ2 586 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 PHC2Q8IXK0 858 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 PARP16Q8N5Y8 322 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 ITLN1Q8WWA0 313 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 OR5P3Q8WZ94 311 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 CCL17Q92583 94 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 RDH5Q92781 318 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 TMEM203Q969S6 136 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 ERGIC1Q969X5 290 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 TMEM106AQ96A25 262 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 MEGF10Q96KG7 1140 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 CHST5Q9GZS9 411 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 ZCCHC4Q9H5U6 513 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 FN3KRPQ9HA64 309 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 MYOZ1Q9NP98 299 aaPredicted RBP8.73□□□□□ -1.01
SKA1-204ENST00000488454 DLL4Q9NR61 685 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 GPR173Q9NS66 373 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 ITGB1BP2Q9UKP3 347 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 PPP1R3CQ9UQK1 317 aa8.73□□□□□ -1.01
SKA1-204ENST00000488454 DSCAMO60469 2012 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 IGHV1-69-2A0A0G2JMI3 117 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 IGHV3-64DA0A0J9YX35 117 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 TRBV5-5A0A0J9YX44 114 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 FAM230AA0A1W2PPH8 454 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 OR5B21A6NL26 309 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 A6NLC8 198 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 LRRC30A6NM36 301 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 ZNF879B4DU55 563 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 ZNF732B4DXR9 585 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 IFNL4K9M1U5 179 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 CDC14BO60729 498 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 IGHV4-39P01824 125 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 CSF3P09919 207 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 ATF1P18846 271 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 RAB3AP20336 220 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 EPHA1P21709 976 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 GABRA5P31644 462 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 CRYBB2P43320 205 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 PDLIM4P50479 330 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 GPM6AP51674 278 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 FUT6P51993 359 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 RPS11P62280 158 aaKnown RBP eCLIP8.72□□□□□ -1.01
SKA1-204ENST00000488454 MRPS11P82912 194 aaKnown RBP8.72□□□□□ -1.01
SKA1-204ENST00000488454 MAB21L1Q13394 359 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 UBE2V2Q15819 145 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 SYT6Q5T7P8 510 aaPredicted RBP8.72□□□□□ -1.01
SKA1-204ENST00000488454 TMEM42Q69YG0 159 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 CLEC2AQ6UVW9 174 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 UTS2BQ765I0 119 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 CEACAM19Q7Z692 300 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 PEG10Q86TG7 708 aaKnown RBP8.72□□□□□ -1.01
SKA1-204ENST00000488454 ZNF573Q86YE8 665 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 OR13C5Q8NGS8 318 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 OR11L1Q8NGX0 322 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 RGP1Q92546 391 aaPredicted RBP8.72□□□□□ -1.01
SKA1-204ENST00000488454 DVL3Q92997 716 aaPredicted RBP8.72□□□□□ -1.01
SKA1-204ENST00000488454 OR14A2Q96R54 314 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 FOXC2Q99958 501 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 MRPS26Q9BYN8 205 aaKnown RBP8.72□□□□□ -1.01
SKA1-204ENST00000488454 PPP1R3EQ9H7J1 279 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 CENPEQ02224 2701 aa8.72□□□□□ -1.01
SKA1-204ENST00000488454 CACNA1DQ01668 2161 aa8.71□□□□□ -1.01
SKA1-204ENST00000488454 A0A1W2PPK0 400 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 hCG_1807616A0A1W2PRN6 198 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 SULT1B1O43704 296 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 NCR1O76036 304 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 LY6HO94772 140 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 HCKP08631 526 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 COL8A2P25067 703 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 TGFBR2P37173 567 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 RBP2P50120 134 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 ART1P52961 327 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 ATP1B3P54709 279 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 MTCP1P56278 107 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 RPS25P62851 125 aaKnown RBP8.71□□□□□ -1.02
SKA1-204ENST00000488454 DMRTC1Q5HYR2 192 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 PRAMEF6Q5VXH4 476 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 SHEQ5VZ18 495 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 PRSS57Q6UWY2 283 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 MOGAT3Q86VF5 341 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 C1orf87Q8N0U7 546 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 DNAAF1Q8NEP3 725 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 OR1M1Q8NGA1 313 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 OR13C9Q8NGT0 318 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 ZNF671Q8TAW3 534 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 TRMT10AQ8TBZ6 339 aaKnown RBP8.71□□□□□ -1.02
SKA1-204ENST00000488454 NPRL2Q8WTW4 380 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 WFDC12Q8WWY7 111 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 PHYHIPQ92561 330 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 MUL1Q969V5 352 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 SPSB1Q96BD6 273 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 BORCS8Q96FH0 119 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 CPNE2Q96FN4 548 aaPredicted RBP8.71□□□□□ -1.02
SKA1-204ENST00000488454 SLITRK2Q9H156 845 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 CHODLQ9H9P2 273 aa8.71□□□□□ -1.02
SKA1-204ENST00000488454 TCF7L1Q9HCS4 588 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms