RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SLC22A4Q9H015 551 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 CNTD2Q9H8S5 307 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 SPATA2Q9UM82 520 aa14.68□□□□□ -0.06
CCDC28B-202ENST00000421922 ANKHD1Q8IWZ3 2542 aaKnown RBP14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 LOC100289279A0A1B0GTE1 492 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 UBBP0CG47 229 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 CA6P23280 308 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 POU3F4P49335 361 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 NKX6-1P78426 367 aaPredicted RBP14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 ZNF846Q147U1 533 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 OR8G1Q15617 311 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 CEACAM21Q3KPI0 293 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 LRRC28Q86X40 367 aaPredicted RBP14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 OR8G5Q8NG78 346 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 OR51D1Q8NGF3 324 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 TNFAIP8L1Q8WVP5 186 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 WDFY2Q96P53 400 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 NKX3-1Q99801 234 aaPredicted RBP14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 RTL8AQ9BWD3 113 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 ELL3Q9HB65 397 aaPredicted RBP14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 TMEM100Q9NV29 134 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 CADP27708 2225 aa14.67□□□□□ -0.06
CCDC28B-202ENST00000421922 PLSCR5A0PG75 271 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 OR5B21A6NL26 309 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 CLDN25C9JDP6 229 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 BPNT1O95861 308 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 CYB5AP00167 134 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 KIR2DL3P43628 341 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 ANGPTL5Q86XS5 388 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 OR5A2Q8NGI9 324 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 OR4D6Q8NGJ1 314 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 OR5D18Q8NGL1 313 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 OR5H6Q8NGV6 325 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 DVL3Q92997 716 aaPredicted RBP14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 PHF21AQ96BD5 680 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 RNF170Q96K19 258 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 CMTM3Q96MX0 182 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 CA10Q9NS85 328 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 ING4Q9UNL4 249 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 RNF115Q9Y4L5 304 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 SPTBN1Q01082 2364 aaKnown RBP14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 APOA1P02647 267 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 TMEM225BP0DP42 221 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 ZNF250P15622 560 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 TNFSF8P32971 234 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 OR3A4PP47883 348 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 GPM6AP51674 278 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 ART1P52961 327 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 GNG3P63215 75 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 MZT1Q08AG7 82 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 GLIPR1L1Q6UWM5 242 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 OR13G1Q8NGZ3 307 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 TMEM171Q8WVE6 324 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 SYT3Q9BQG1 590 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 ZNF442Q9H7R0 627 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 NPDC1Q9NQX5 325 aaPredicted RBP14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 EXTL2Q9UBQ6 330 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 OR5V1Q9UGF6 321 aa14.66□□□□□ -0.06
CCDC28B-202ENST00000421922 COL12A1Q99715 3063 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 DOPEY2Q9Y3R5 2298 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 ZNF732B4DXR9 585 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 LILRA1O75019 489 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 PLATP00750 562 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 CD37P11049 281 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 BMP4P12644 408 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 PTGFRP43088 359 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 NKPD1Q17RQ9 610 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 C2orf76Q3KRA6 126 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 ALKBH6Q3KRA9 238 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 FAM166AQ6J272 317 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 FAM131AQ6UXB0 335 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 KRT74Q7RTS7 529 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 SPERTQ8NA61 448 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 RAB40AQ8WXH6 277 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 OR5P3Q8WZ94 311 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 MRPL24Q96A35 216 aaKnown RBP14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 ITPKCQ96DU7 683 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 PIK3IP1Q96FE7 263 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 CST11Q9H112 138 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 MIXL1Q9H2W2 232 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 CRIM1Q9NZV1 1036 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 GHRLQ9UBU3 117 aa14.65□□□□□ -0.06
CCDC28B-202ENST00000421922 IGHV3-13P01766 116 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 ELK1P19419 428 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 ZNF45Q02386 682 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 RSU1Q15404 277 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 CNIH2Q6PI25 160 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 ZNF573Q86YE8 665 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 SSC4DQ8WTU2 575 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 HPSE2Q8WWQ2 592 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 SLC25A28Q96A46 364 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 S100A16Q96FQ6 103 aaKnown RBP14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 METTL9Q9H1A3 318 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 PLK3Q9H4B4 646 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 PPP1R3EQ9H7J1 279 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 AKIP1Q9NQ31 210 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 PCDHB16Q9NRJ7 776 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 CYSLTR2Q9NS75 346 aa14.64□□□□□ -0.07
CCDC28B-202ENST00000421922 C14orf119Q9NWQ9 140 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms